Panicum virgatum (switchgrass): 120667239
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Entry
120667239 CDS
T07260
Name
(RefSeq) serine/threonine-protein phosphatase PP1-like
KO
K06269
serine/threonine-protein phosphatase PP1 catalytic subunit [EC:
3.1.3.16
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120667239
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120667239
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120667239
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120667239
03041 Spliceosome [BR:
pvir03041
]
120667239
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120667239
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
Catalytic subunits
120667239
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120667239
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120667239
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120667239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
STPPase_N
Motif
Other DBs
NCBI-GeneID:
120667239
NCBI-ProteinID:
XP_039803252
LinkDB
All DBs
Position
3N:10258675..10262108
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AA seq
322 aa
AA seq
DB search
MMMTRAPMGPMEGAAVDEVVRRLVEGGRGGRQVQLSEAEIRQLCVEGKRVLLSQPNLLRI
HAPVKICGDIHGQFVDLLRLFDLGGYPPASTYVFLGDYVDRGKQSLETICLLLAYKIRYP
EKIFLLRGNHEDAKINRVYGFYDECKRRFNVRLWKIFSDCFNCLPIAAVIDDKILCMHGG
LSPELTSLDQIKDIERPAEIPDYGLLCDLLWSDPSPDGEGWGESDRGVSCTFGADKLVEF
LEKNDLDLICRAHQVVEDGYEFFAQRRLVTIFSAPNYCGEFDNAGALLSIDESLMCSFQI
LKPTDMGPPHARKQIPNKPARG
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgacgcgggccccgatggggccgatggagggcgcggcggtggacgaggtggtg
cgccggctcgtggagggcggccgcggcgggcgtcaggtgcagctttcggaggcggagatc
cggcagctctgcgtcgagggaaagcgtgtgctcctctcccagcccaacctgctccgaatc
cacgcccccgtcaagatctgcggtgatattcatggccagtttgttgaccttctgagactg
ttcgatttgggtggttaccctccagcttcaacttatgtattcctaggagattatgtcgat
agaggaaaacagagcttggaaactatatgcttgctgctggcatacaaaatcaggtaccct
gaaaagattttcctgttgagagggaaccatgaagatgcaaaaatcaacagagtatatggt
ttctacgatgagtgcaagaggaggttcaatgtccggctgtggaagatattctcggattgc
ttcaactgccttcctattgcagcagtcattgatgacaagatactgtgcatgcatggtggt
ctctcacctgaattgactagtttggaccagataaaggatattgagagaccagctgagatt
cctgattatggtctcctctgtgatttgctttggtctgatcctagcccagatggagaagga
tggggggagagtgacaggggtgtttcatgtacgtttggtgcagataagcttgtagagttt
ttggagaagaatgatctcgatcttatttgccgagctcatcaggtggttgaagatggctat
gagttcttcgcacaacggcgattagtgacgatcttctctgctccgaattattgtggagaa
tttgataatgcgggtgctctattgagcatagatgagagcctaatgtgttcatttcagatc
ctgaagccaactgatatgggtccaccacatgctagaaaacaaattccaaataagccagcc
agagggtga
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