Panicum virgatum (switchgrass): 120667240
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Entry
120667240 CDS
T07260
Name
(RefSeq) U1 small nuclear ribonucleoprotein A
KO
K11091
U1 small nuclear ribonucleoprotein A
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120667240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120667240
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
120667240
Complex B
120667240
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_YTH1
RRM_10
DUF4523
Motif
Other DBs
NCBI-GeneID:
120667240
NCBI-ProteinID:
XP_039803253
LinkDB
All DBs
Position
3N:10263037..10266725
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AA seq
252 aa
AA seq
DB search
MSGEAPAVGGGGGEANGIPPNVTIYINNLNEKIKLDELKKSLNAVFSQFGKILDVLAFKT
LKHKGQAWVVFEDVASATEAIKRMQDFPFYDKPMRIQYAKTKSDILAKADGTFVPRERRK
RVDEKPEKKQKREQHHDASQIGMGVNAYPGVYGAPQLTQLPVAGGQRVMMPEIIVPNNIL
FIQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEAQATAAMTHLQGFKIT
KENQMVITYAKK
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgagcggagaggcgccggccgtcggtggcggcggaggggaagcgaacggcatcccgccg
aacgtcaccatctacatcaacaatcttaacgagaagatcaagctcgatgaacttaaaaag
tccctcaacgctgttttttcccagtttgggaagattcttgatgtgcttgctttcaagact
ctgaagcataaaggccaagcttgggttgtcttcgaagatgtcgcatcagcaactgaggct
ataaagaggatgcaagactttcccttttacgacaaacctatgagaattcaatatgccaag
accaagtcggatattttagcaaaagctgatggcacctttgtccctcgagaaagaaggaag
agggttgatgaaaaacctgaaaagaagcagaagcgcgagcagcaccatgatgctagtcaa
attggcatgggtgtaaatgcctaccctggtgtttatggggctcctcagctcacccagttg
ccggtagctggaggccagagagtcatgatgccagagattattgtaccaaacaacatcctc
ttcatccaaaacctgccacatgagacaacccccatgatgctgcaaatgctcttctgccag
taccctggcttcaaggaggttcggatggttgaggcaaagcctgggatcgcttttgtggag
tatggagacgaggcgcaggccaccgctgccatgacccatcttcaaggctttaagattaca
aaagagaaccagatggtcatcacttatgcgaagaagtag
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