Panicum virgatum (switchgrass): 120667275
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Entry
120667275 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase UPL6-like isoform X1
KO
K10589
ubiquitin-protein ligase E3 C [EC:
2.3.2.26
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120667275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120667275
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120667275
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
HECT type E3
120667275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
IQ
Motif
Other DBs
NCBI-GeneID:
120667275
NCBI-ProteinID:
XP_039803296
LinkDB
All DBs
Position
3N:10577724..10592695
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AA seq
1027 aa
AA seq
DB search
MFFSGDPSARRRVDLGGRSNKERDRKVLLEQTREERRRRQGLRLQNSSATKIQKFFRGKK
ALELARSEIRKNFCSTFGEHCERIDWNSFGTNSDFLRQLLFFFNANEDNDVAILCQVCNL
LLQYVKRGGDTVTLFAGVNDSSQQPLVAHRVKKLALICVQAVYQKRHDWGSQLLTAPGST
SVPSVSLLETVACLINPKLPWNCKVVGYLQRRKIYCLFRDIIISVPQKDKNFGQFDSAST
LEQVFILVASHVGHHPCCCPVVDPRWSFSSQLLSIPFLWHRLPQLKKVFTVNGISKYYIH
QIACFLPSLADVLPNDISANHPGYACVLANVLEASTSILSDANFASDTAADIITVSTSLL
DTLPAVTSPTERADDDDEMPMDVDVKNGLDVDLERQITTAIDSKLLQHLVNALFRVRLST
DHSDLSGPSDAEVDAVGSICAFLHVTFNTFPLERIMTVLAYRTEIVPALWNFIKRCHENR
RWPYFSKFASSLPADAPGWLLPMSVFCPIYKHMLKIIDNGEFYEQEKPLSLKDLKSLVLI
LKQALWQLLWVIPSSSTLKVAPNPSGLKKLSVENVKTRARVGLSELLTQLQDWNSRLPFT
SASDFYSQEATSENFVSQAILGNTRASEIIKLAPFLAPFTSRVKIFTSQLSSSRQSASHS
ALTRHRFKIRRNRLLEDAFDQLSLLSEEDLKGPIRVSFINEHGEEEAGIDGGGIFKDFME
NITRAAFDVQYGLFKETADHLLYPNPASGLVHELHLQYFHFLGSLLGKAMYEGILVDLPF
ATFFLSKLKQKYNFLNDLPSLDPELYRHLLFLKHYNGDISELELYFVIVNNEYGEQCEEE
LLPGGRDMRVTNDNVITFIHLVANHRLNYQIRAQSTHFLRGFQQLIPKDWIDMFNEHEIQ
VLISGSLESLDIDDLRSNTNYSAGYHPDHEVIEMFWEVLKSFSSDNQKKFLKFVTGCSRG
PLLGFQYLEPKFCIHRAGVPGMEEHADRLPTSATCMNLLKLPPYKTKEQLQTKLLYAINS
EAGFDLS
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgttcttctccggtgacccgtcggcgcggaggcgggtggacctcggcgggcggagcaac
aaggagcgcgaccgcaaggtgctgctcgagcagacgcgcgaggagcggcgccgccggcag
ggcctccgcctccagaactcatccgccaccaagatacagaaattcttcagaggtaagaag
gctttggaactggcacgttcagaaattcggaagaacttttgctctactttcggggagcat
tgtgagaggatagactggaacagctttggcactaattctgactttcttcgtcaattgctg
tttttcttcaatgcaaatgaggacaatgatgttgctatactttgtcaagtctgcaatttg
ctgctacaatatgttaaacgtggtggagatactgtcactctctttgctggtgtaaatgac
tcctcacagcaaccacttgttgctcacagagtaaaaaaacttgcactcatctgtgtgcaa
gcagtctatcaaaagaggcatgattggggtagccaacttttgacagcacctggaagcaca
tcagtgccttctgtctcgttactagaaactgtagcttgcttaataaatcctaaacttcca
tggaactgcaaagtagttgggtatcttcagcggagaaagatctattgcttattccgggac
attattatatctgtaccgcaaaaggacaaaaattttgggcaatttgatagtgcatctacg
ctggaacaagttttcatccttgttgcttcacatgttggccatcatccttgttgttgtcca
gtagttgatccaaggtggagtttctcctctcagcttctgtccatcccatttctatggcat
cgtttgccgcaactcaagaaggttttcacagttaatggaatcagcaaatattatatccat
caaatagcctgctttttgcccagtcttgctgatgttcttccaaatgatatatcagctaat
catccaggatatgcttgtgtccttgcaaatgttcttgaagcttcaacctcgattttgtcc
gatgcaaattttgcttctgacacagcggctgacatcatcactgtttctacgtcattgtta
gacacgttgccagcagtcacatcacctacagaaagggcagatgatgatgatgagatgcct
atggatgttgatgttaaaaatggtcttgatgttgatttggaaagacagataactacggca
attgattcaaagctacttcaacatttggtgaatgcactcttcagagttagattaagcaca
gaccattctgatctttctggaccgtcagatgctgaagtggatgctgtagggtctatttgt
gcttttcttcatgtcacattcaacacattccctctagagcggattatgactgtgctggcg
taccggactgaaattgttcctgcactatggaattttataaaacgatgccatgaaaaccga
agatggccatatttttccaagtttgcatcttcattacctgcagatgctcctggttggctc
ctgcccatgtctgtattctgtcccatatacaagcacatgttgaagatcattgataatggg
gagttctatgaacaagagaagcctctttcacttaaagatttgaagtccctcgttctcatt
ttaaaacaggcattatggcaacttctgtgggttattccttcctcttctactctgaaagtg
gcacccaacccttcaggcctcaaaaaattgtcagtggagaatgtcaaaaccagagctagg
gttgggttatctgaactactcacacagttgcaagactggaacagccgactcccattcact
tctgcaagtgatttctattctcaagaagcaacaagtgaaaattttgtgtctcaggcaata
cttggcaatactcgagcatcagagattataaagcttgctcctttcttggcgccatttact
agtagagtcaaaatattcacttcccaattgtcaagttctagacaatcggcatcacattct
gcattgacaagacatcggttcaaaataagaagaaatcgacttctggaagatgcttttgat
cagctaagtctgctttctgaagaggatctcaaaggaccgatccgagtgtcatttattaat
gagcatggtgaggaagaggctggaattgatggtggcggaattttcaaagatttcatggaa
aatatcactcgagctgcttttgatgtacagtatggtctcttcaaggagacagctgatcat
cttctgtacccaaaccccgcatcaggattggttcatgaactacacctgcaatatttccat
tttcttggaagtctccttggaaaggcaatgtatgagggcatacttgtggacttgccattt
gcgacgttcttcttgagcaagttgaaacaaaagtacaattttttaaatgatcttccttca
ttggatccagaattatatcgacatcttctgttcttaaagcattacaacggtgatatctca
gaactggaactgtattttgtcattgtgaataatgaatatggtgaacagtgtgaagaagaa
cttctccctggtgggagagacatgcgtgttactaatgataatgttattacttttatccat
cttgttgccaatcatcggttaaactaccagattcgtgcacaaagtacacacttcttgcga
ggttttcaacagcttataccaaaagactggattgatatgttcaatgaacatgaaattcag
gttctcatatctggctctttggaaagcttggatattgatgacttgcggtcaaacaccaac
tattctgcaggatatcatccagaccatgaggtcattgagatgttttgggaggtcctgaag
agcttcagttcagacaatcagaaaaaatttctcaagtttgtgaccggatgttctcgtggc
ccactccttggattccagtacctcgaaccaaaattttgcattcatagagctggtgttcca
ggcatggaggagcatgctgaccgcctgcctacatcggctacttgcatgaacctcctgaag
cttcccccctataaaaccaaggagcagttgcagaccaagctgctgtacgccataaattca
gaagctggttttgatcttagttga
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