Panicum virgatum (switchgrass): 120667292
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Entry
120667292 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor RS2Z33-like isoform X1
KO
K12896
serine/arginine-rich splicing factor 7
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120667292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120667292
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120667292
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
zf-CCHC
zf-CCHC_5
zf-CCHC_3
zf-CCHC_4
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
120667292
NCBI-ProteinID:
XP_039803317
LinkDB
All DBs
Position
3N:complement(10717903..10721857)
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AA seq
254 aa
AA seq
DB search
MPRYDDRYDYDDRYDHYGRHGGNTKLYVGQISPHTQIHDLEDLFSKYGRLRKVDLKRDFG
FVEFSDPRDADDARYDLDGRKFDGSCIVVEFARGVPCGPGGVRQYGRGPPGRCYNCGMDG
HWVRDCKASDWRDRCYRCGEMGHLERNCQNSPKDLKRDRRYSRSPSPRHGKGQGRSRSYS
RSPSPRHARGRSWTYSRSPPPRRDYNTGGEELPSKSAHYSPNPRRNLPPREQAERNGSYH
GGSPRRGEAREKRQ
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgatacgatgaccgctatgattacgatgatcgatacgaccactatggtcgacat
ggtggtaacaccaagttgtacgtgggtcagatttctcctcatactcagatacatgatctt
gaggaccttttcagcaaatatgggagactgcggaaagtggatctgaagagggactttggc
tttgttgagtttagtgatcctcgggatgccgatgacgcaaggtatgatcttgatggccga
aaatttgatgggagttgtatcgttgttgagtttgcaagaggggtcccgtgtggtccagga
ggtgtccgccaatatggcagaggacctcctggccgctgctataactgtgggatggatggg
cactgggttcgtgattgcaaagctagtgactggcgggataggtgctaccgctgtggagaa
atgggccatctagaaagaaactgccagaacagtccaaaggatctgaagcgagacagacgc
tactcaaggtctccatctcctcgccatggaaagggccaagggagaagcagaagctactca
aggtctccgtctcctcgtcatgcaaggggccgaagctggacttacagtaggtcgccaccg
ccaaggagggattacaacactggtggggaagagttgccgtcaaaaagcgcccattacagc
cccaaccccaggaggaacctcccaccaagggaacaagctgaacgcaatggctcatatcat
ggtgggagccccagaagaggtgaagctcgtgagaagcgccagtga
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integrated database retrieval system
