Panicum virgatum (switchgrass): 120667545
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Entry
120667545 CDS
T07260
Name
(RefSeq) syntaxin-32-like
KO
K08490
syntaxin 5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120667545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120667545
Membrane trafficking [BR:
pvir04131
]
SNARE
Syntaxin (Qa)
Stx-cisGolgi
120667545
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNARE
Syntaxin
Syntaxin-5_N
Use1
Motif
Other DBs
NCBI-GeneID:
120667545
NCBI-ProteinID:
XP_039803535
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All DBs
Position
3N:11791139..11794052
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AA seq
313 aa
AA seq
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MLRPRHQPSSCRDRTREFRGAYGAAGGSPGPGPLVVSEFRRRAAGVGHGINEASRKIAHL
AQLAKSTSVFDDPTAGIQNLTAAVNKNITALKAAVLDLQILIKSQSEGGKISQDAANHST
VIVDILKESLTNTTKEFNEVLTTRAKILRVHQDRRNFFSLSASGDGSNPSVKQGQPSESI
ACAPWAVNSASNSLFQRQRNRGDISCSSGQQQQQQLAVQQHNYIQSRAGAIQNVESTTNE
LTQIFRQLATMVSQQGEVAIRIDENMDDTLVNVEGAQEQLLKHLNNISSNRWLMSKIFIV
LIIFLLIFVLFIT
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcccgcggcaccagccgtcgtcttgccgcgaccgtacgcgcgagttccgcggc
gcgtacggcgccgccggtggctctcccggccccgggccgttagtagtgtcggagttcagg
aggcgagccgccggcgtcgggcacggcatcaacgaagcctcgaggaagatcgcgcacctc
gcgcagctggcaaagagcacatctgtttttgatgaccctactgccggtatacaaaatctg
actgctgcagtcaacaagaacatcactgccttgaaggctgctgttttagaccttcagatc
ctcatcaaatcacaaagcgagggtggaaaaatttcacaagatgcagcgaatcattcaact
gtgatagtagacatcctgaaagaaagcctaacgaacaccacaaaggaattcaacgaagtt
ttgaccacgagggcaaagatcttgagggtccatcaagacagaagaaattttttctcattg
tcagcttcaggggacggatcaaatccttccgtcaagcagggtcaaccatctgagtccata
gcttgtgcaccatgggctgttaactctgcttctaactctttgtttcaaaggcagagaaat
agaggtgatatatcttgttcatctgggcagcagcagcagcagcagttagctgtccagcag
cacaattacatacagagcagagcaggggctattcaaaacgtggaatcaaccaccaacgag
ctgacccaaattttcagacaactagcaactatggtttctcagcaaggagaggtagcaatc
aggatcgatgagaacatggatgacactcttgttaatgtagagggtgcccaagagcaactc
ctcaagcatctcaacaatatatcatctaacaggtggctgatgagcaagatcttcattgtg
ctcattattttcctcttgatatttgtgctcttcatcacgtga
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