Panicum virgatum (switchgrass): 120667566
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Entry
120667566 CDS
T07260
Name
(RefSeq) rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
120667566
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
120667566
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
120667566
NCBI-ProteinID:
XP_039803551
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Position
3N:13095470..13098420
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AA seq
674 aa
AA seq
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MAAAPRWCLQLAVRASLLVLLLAADAPPPQAGGAVTLHADDPTQVVVDNGVVQVSLYRLQ
GQITGVRYGGGGGGQNLLQYDASQRNSGGYWDVVWNYPGSNRPGTMDMLDGTEFQVVSST
EEQVELSFRSSYNASRPNSLRLNVDKRLVMLRGSSGFYCYAIFEHAPEYPALNVSVARLA
FKLNAAMFNYMAISDDIQRYMPSAADRDPPRGVPLAYKEAVLLVDPVEPEFRGEVDDKYQ
YALDNQDNLVHGWIGGGGGDPASAAATGFWVVTPSNEFKNGGPLKRELTSHTGPTSLAVF
LGPHYVGRDMVIQFEEGESWKKVLGPVFIYLNSGDHPSCKRDLWEDAKARARAEVSRWPY
TFPASPDFAKACERGSVTGRLWVRDDVANAKQQQQPAAMAYVGLAAPGQPGSWARESKRY
QFWTRATSDGRFSIGNVRGGVYNLYAWVPGVLGDYMHASSVTVTPACAVNAGDLVFEPPR
SGPTLWEIGVPDRSAAELHVSDPDPRYASRLFLARDRYRQYGLWERYAALYPDGDLVFTV
GESNHSRDWFFAHVTRYFFGTVVPTTWQIRFHLDGVVAGGTYTLRIALAASHMASLQVRV
NGGDGAPPSPALLMGDNNAIARHGIRGTEWSLDFGIEGRLLNQGDNTIHITQASALNQFV
GVMYDYIRLEGPSM
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcaccgaggtggtgcctccagctcgccgtgcgagcgtccctgctggtgctg
ctcctcgccgccgatgcgccgccgccgcaagcaggcggtgcggtcaccttacacgccgac
gaccctacccaggtggtcgtggacaatggcgtggtgcaggtgtcgctgtacaggctgcag
ggccagatcaccggcgtccgctacggcggcggcggcggcggccagaacctgctccagtac
gacgccagccagaggaactcgggagggtactgggatgtggtctggaattaccctggctcg
aatcgcccaggaacgatggatatgttggacggcacagagttccaggttgtatcctcaact
gaggagcaagtggagctttctttcaggagctcatacaacgcgtcacgtccgaacagcctc
cggctaaacgtcgacaagaggcttgtgatgctgagaggcagctccgggttctactgctac
gccatctttgagcacgccccggagtacccagctctcaacgtctcggtggctcgcctcgcc
ttcaagctcaacgccgccatgttcaactacatggcgatctcggacgacatccagaggtac
atgccgagcgcggcggacagggacccgccccgcggcgtcccgctggcgtacaaggaggcc
gtcctgctcgtcgaccccgtggagccggagttcagaggggaggtggacgacaagtaccag
tacgcgctggacaaccaggataacttggtgcacggatggatcggcggcggcggcggcgat
ccggcgtcggcggctgcgacgggcttctgggtcgtcactcccagcaacgagttcaagaac
ggcgggccgctcaagcgggagctcacctcccacaccggccccacctccctcgcggtgttt
ctaggcccgcattacgtcggcagggacatggtgatccagttcgaggagggcgagagctgg
aagaaggtgctgggccccgtcttcatctacctcaactccggcgaccacccgagctgcaag
agagacctctgggaggacgccaaggcgcgggcgcgagcggaggtcagcagatggccctac
accttccccgcgtcgccggacttcgcaaaggcgtgcgagagaggctccgtcacggggagg
ctctgggtcagagacgacgtcgccaacgccaagcagcagcagcaacctgccgccatggcc
tacgtcgggctcgccgcgcctggccaaccaggttcctgggccagagagagcaagaggtat
cagttctggacgagggccacctccgacggccgcttcagcatcggcaacgtccggggagga
gtgtacaacctctacgcctgggtccccggggtcctcggcgactacatgcacgcctcctcc
gtgacggtgacgccggcgtgcgccgtcaacgccggcgacctcgtgttcgagcccccgagg
tcgggccccacgctgtgggagatcggcgtcccggaccggtcggcggcggagttacacgtc
tccgacccggacccgaggtacgccagccggctcttcctcgccagggacaggtacaggcag
tacggcctgtgggagaggtacgccgccctctaccccgacggcgacctcgtgttcaccgtc
ggcgagagcaaccactccagggactggttcttcgcgcacgtcacgaggtacttcttcggc
actgtcgtgccgacgacgtggcagatacgcttccacctggacggcgtcgtggcgggcggc
acctacacgctgcggatcgccctcgcggcgtcccacatggccagcctgcaggtgcgggtg
aacggcggcgacggcgcgccgccgtcgccggcgttgcttatgggcgacaacaacgccatc
gcgcggcacggcatacgcggcacggagtggagcctggattttggtatcgagggccgcctg
ctcaaccaaggggacaacaccatccacatcacccaggcgagcgccctgaaccagttcgtc
ggggtcatgtacgactacattcgcctcgaaggcccttccatgtag
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