Panicum virgatum (switchgrass): 120667740
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Entry
120667740 CDS
T07260
Name
(RefSeq) protein LATERAL ROOT PRIMORDIUM 1-like
KO
K27807
short internodes/stylish family transcription factor
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120667740
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
120667740
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Gene cluster
GFIT
Motif
Pfam:
DUF702
Motif
Other DBs
NCBI-GeneID:
120667740
NCBI-ProteinID:
XP_039803686
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Position
3N:30509308..30511757
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AA seq
441 aa
AA seq
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MSFAQPPGPAFNARRGSSLLLQSCRAGGGRRRSEPEAQSSCLPKGQRPSGDRSPPAQRNF
PEPAAAASVASSSGRRFPADATAIAGWLPAAPGGRGDDLSLGFNAGAASAGPGAGSLAAG
LWGPAASRQAAAALGYGAVGGAAGDVGMLVVAPAGSFHHQRAGGASAADDPVFPLIAAAQ
RTLVDADAASGKPSAAGAIQFWHPEPQAGDLAAADGSRGKKALAMLDQGRGGAGSGSGAA
TCHDCGNQAKKGCAHSRCRTCCNSRGFDCETHVRSTWVPAARRRERLQLAGASPPPPAPA
AAKKPRLACQTSTMTTNSRTSTSNATTPRSLDTSSSHQDASFKDNLPRQVRGPAVFRCVQ
VTSVDDGGGEVAYQAAVTINGHLFRGLLYDHGADTDGRAADAVQLGTSDLHLGSASAAAA
NLCSGASAPLILGGLGYGNTP
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcgcgcagccgcccgggccagcttttaacgcgcgccgcggcagcagcctcctg
ctgcagtcctgccgagcaggcggcggccgcaggcgcagtgagccagaagcgcagagctcc
tgcctgcccaagggccagaggccgagtggcgatcgatccccgcccgcgcagaggaatttc
ccagagccggccgcggccgcaagcgtggcgtcctcgtcggggcggcgcttcccggcggac
gccacggcgatcgcgggctggctgccggcggcccccggcggccgcggggacgacctctcg
ctcggcttcaatgccggcgccgcctccgcggggcccggcgcgggctcgctggcggccggg
ctctggggccccgcggcctcgcgccaggccgccgcggcgctcgggtacggggcggtaggc
ggcgctgccggtgacgtcgggatgctggtcgtcgcgcccgcgggctcgttccaccaccag
cgggctgggggagcgtcggccgccgacgaccccgtgttcccgctcatcgccgcggcgcag
cgcaccctcgtcgacgccgacgccgcctccgggaagccgtccgccgcgggcgccatccag
ttctggcacccggagccgcaggcgggggatttggcggccgcggacggctcccgcggcaag
aaggccctcgccatgctggaccagggccgcggcggggccggctccgggtccggcgcggcg
acgtgccacgactgcggcaaccaggcgaagaaggggtgcgcgcacagccgctgccgcacc
tgctgcaacagccgcggcttcgactgcgagacccacgtcaggagcacctgggtgcccgcc
gcccggcgccgggagcgcctgcagctcgccggcgcgtccccacctccccccgcgcccgcc
gccgccaagaaaccacgcctcgcgtgccagacctccacgatgaccaccaactcccgcacc
tccacctccaacgccaccacccctcgcagcctcgacacctcctcgagccaccaagacgcg
tcgttcaaggacaacctgccccggcaggtgcgggggccggcggtgttccggtgcgtgcag
gtgacgtccgtcgacgacggcggcggcgaggtcgcgtaccaggctgcggtgaccatcaac
gggcacctgttcaggggcctcctgtacgaccacggcgccgacaccgacggccgcgccgcc
gacgccgtgcagctcggcacctccgacctccacctcggcagcgcctcggccgcggccgcc
aacctgtgcagcggcgccagcgccccgctcatcctcggcggcctgggctacggtaacacg
ccatga
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