Panicum virgatum (switchgrass): 120667937
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Entry
120667937 CDS
T07260
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120667937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120667937
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
120667937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
120667937
NCBI-ProteinID:
XP_039803849
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Position
2K:complement(13924058..13930996)
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AA seq
962 aa
AA seq
DB search
MSAGGGDPLTPTSGIFYRRHKKSAEHNTSVLTPGVATYSSGHALPVASRFPSLEFGSASK
EWENIRQRKIQLINFLSSLERPSENSVIANRMAGGKLNNYSMEPKKQQENTEIIEIGDSD
DEDGNNSGSNKFSLKINKELTTSELPSNITKWVASNGMSQAFESMHMEGNKNTQIVPYGQ
SAALVNQFPLQTSWQPSVQYEKVVLQKRPEEQRMQDLVAVNMAEKRAETQVFLHHLTEKK
RRRSDPSLHVSEDATTAPRQRKRKSGTDPVAADLSLDLGQTDISSEPDLPMKEEEKPTNE
SDGLEEYWKDFALAIESTKIDAFDEAANEREEDHGKVEDVDCNHDIRIHEDLGHVCRVCG
MIVRRAESIIDYQWKKASRRRTSCYGGHSKDADEIDCGSVRLSEEFVIADIAIHPRHAKQ
MRPHQLEGFNFLVKNLIGDKPGGCILAHAPGSGKTFMLISFIQSFLARYPSARPLVVLPK
GILGTWKKEIQQWQVQDIPLYDFYSVKAEKRVDQLEVLKSWEDKMSILFLGYKQFSTIVS
DDGGSKAAAACRDRLLKVPNLLIMDEGHTPRNRETDVLESLRRVETPRKVVLSGTLFQNH
VGEVFNILNLVRPKFLKMESSRPVVRRIMSQVEMSGRSSKGIGYIAFTELVEGTLLNDDN
FKRKAQVIKSLRELTKDVLHYYKGDILDELPGLVDFSVFLNLTSIQKEVIQKKMGAYDKF
KRSAVDTSLYVHPCLSEISEVNAEDRASNLTDQSIDTMIESIDVRDGVKARFFMNILSLA
SSAGEKLLAFSQYLLPMRFLERLLVKVKGWHVGKEIFMISGDTSQEDRELLVDQFNNSAD
AKVLFGSIKACGEGISLVGASRVVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAAD
SAEEKHHETAFKKEVIPKLWFEWSEHCTTEDFKLGQVDIDDCGDELLDTKAMRQDVKALY
RR
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccggcggcggcgacccgctgaccccaacctccggcatattttacagaaggcac
aagaaatctgctgagcataataccagtgtattaacacctggagttgcaacctattccagt
ggtcatgcacttcctgttgcaagtaggttccccagtttggaatttggcagtgctagcaag
gaatgggaaaacattcgtcagcgcaagatacaattgatcaacttcctttctagtctggaa
cgtccctctgaaaattctgtgatagccaacagaatggcaggtggcaaattgaataattat
tctatggagccaaaaaaacaacaagaaaatactgaaataatagaaattggtgattcagat
gatgaggatggaaacaattcaggatccaataagttttcactaaagataaacaaagaacta
acaacctctgaattgcctagtaatatcacgaaatgggtggcatccaatgggatgagccaa
gcatttgaaagcatgcatatggaaggaaacaaaaatacacagattgttccatatggtcaa
agtgcagctttagtgaatcaatttcctttgcaaaccagctggcaaccatctgttcagtat
gagaaagttgtattgcagaaaaggcctgaggagcagcgtatgcaagatcttgtggctgtt
aacatggcggagaagagagcagaaacacaagtgttccttcaccatcttacagagaaaaag
cgaaggagatcagaccccagcttgcatgtcagcgaagatgctaccactgcccctagacaa
aggaaaagaaaatctggcacagatccagtagcagctgatttgtcattggatttaggtcaa
actgatatttcatcagaacctgacctgcctatgaaggaagaggagaaaccaacaaatgaa
agtgacggtcttgaggaatattggaaagattttgcattggccatcgaaagtacaaagatt
gatgcatttgatgaggccgcaaatgagagagaagaggatcatggaaaggtggaggatgtc
gactgcaatcatgacattcggattcatgaagacttgggccatgtatgccgtgtctgtgga
atgattgtgagaagagctgaatcaataattgattatcagtggaaaaaggcttcaaggaga
agaacaagttgctatggaggacattcaaaggacgctgatgagatagattgtggcagcgtt
agactgtctgaagaattcgtaattgcagatattgctattcatcccagacatgctaagcaa
atgagaccacatcagttggaaggattcaactttttggtaaagaatttgatcggagacaag
cctggaggttgtattcttgctcatgccccaggttcggggaaaacatttatgcttataagt
tttattcaaagcttcctagcaaggtatccgtctgcaaggccccttgttgtgctacccaaa
gggatattgggtacatggaagaaagagattcaacagtggcaagtacaggacattccattg
tatgatttctactctgttaaggctgaaaaaagagtagaccaactggaagtcctcaaatct
tgggaagacaagatgagtatactgtttcttgggtacaagcagttctccacaattgtctct
gatgatgggggcagcaaagcagcagccgcatgtagggacaggctgctaaaggtccccaac
cttttgataatggatgagggacatacaccaagaaatagggagactgatgtactagaatct
ctgaggagagtggaaacaccacgcaaagtcgtcctttcaggtacactattccagaatcac
gttggggaagtgtttaacattttgaatcttgttcgcccaaaatttctcaaaatggaatca
tcccgtcctgttgttagacggataatgagtcaagtagaaatgtcaggtagaagttcgaaa
gggattggctacattgcatttactgagttagttgaaggaacactgttgaatgatgacaac
ttcaagagaaaagctcaggtcattaaaagtcttagagagcttaccaaggatgtccttcac
tactacaaaggtgacatattagatgaactacctggcttggttgacttcagcgtgttcttg
aacctcacttccattcagaaagaggttattcagaagaagatgggagcatatgacaagttc
aaaagaagtgcagtagatacttcattgtatgtgcatccatgtctttcagaaatttcagaa
gttaatgctgaggatagggctagcaacttaacagatcaatcaattgatactatgattgag
tccatcgatgtgagagatggggtgaaggccaggtttttcatgaatatcctgtcacttgct
agttccgcaggagagaaattacttgcttttagccaatatctacttccaatgagatttttg
gaaaggctgctggttaaggtgaagggctggcatgtggggaaagagattttcatgatctct
ggtgatactagtcaagaagacagagaattgctagtcgaccaatttaacaactctgctgat
gcaaaagtactgttcggttctatcaaggcatgtggcgagggtatctcccttgttggcgcg
tcaagagttgtcattttagatgttcacctgaacccatctgtcacccgtcaagcgattggg
cgtgcattcagacctggacagcagaagaaagtgtttgtatacaggcttgtagctgctgat
tctgccgaggagaagcaccatgagactgcattcaagaaggaagttataccgaagctgtgg
tttgaatggagtgagcactgcacaacagaagacttcaaacttggtcaagttgatattgat
gactgtggggatgaattattggatactaaagcaatgcgtcaggatgtcaaggcactgtat
agaaggtag
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