Panicum virgatum (switchgrass): 120668439
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Entry
120668439 CDS
T07260
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120668439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120668439
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120668439
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120668439
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120668439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_3
TFIIA
Motif
Other DBs
NCBI-GeneID:
120668439
NCBI-ProteinID:
XP_039804081
LinkDB
All DBs
Position
4N:46268853..46277748
Genome browser
AA seq
641 aa
AA seq
DB search
MEDGDGGLSFDFEGGLDSAPAVGGPVPSSADPGAGGGGGGDGPGMHGRGRGRGSYRQTVC
RHWLRGLCMKGDACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNMYKMG
FCPNGPNCRYKHVKLPGPPPPVEEVLQKILQMRSFNRFGPNRNNNYNQQGERPQHPQGSG
LPNQNVAENTTATAPATGGQQAQMANQQPPQQQHKPNTNDQVQGASNGHQTTRIATPLPQ
GPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESTENVILIFSINRTRHFQGC
AKMTSRIGGYIGGGNWKSAHGTAHYGRNFSMQWLKLCELSFQKTHHLRNPYNDNLPVKIS
RDCQELEPFIGEQLASLLYLEPDSELTAMLIAAEAKREEEKAKGVSADEAADNQDIVLFD
DNEEEEEEESEEEEEGNGQESQGRGRGRGMMWPPQMPMMRGPMMGGRFPPNMIGDGFGFG
GGFGLPDPFGMPRGFPPFGGPRFPVDFARGPMPGMAFTGRPPQPFPLGLDMMMGPGRGPM
MGGMGMGGPGRPNRPIGMAPFMPPPPPNNRPSKREQRRPGGDRGDRFETTSDQGSRGHEN
TLNSGAEGARSQPGDRYGRNALRDDDSESEEEAAPRRSRKR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggcgacggcggcctgagcttcgacttcgagggcggcctcgactccgccccg
gcggtcgggggccccgtgccgtcctccgcggaccctggcgcgggtggcggcggaggcggc
gatggtccgggcatgcacggccgcggccgcggccgcgggagctaccgccagacggtgtgc
cggcactggctgcgcggcctctgcatgaagggtgacgcgtgcgggttcctgcaccagttc
gacaaggcccgcatgcccgtctgccgcttcttccgggacttcggcgagtgccgcgagccc
gactgcgcctataagcactcttacgacgacgtcaaggagtgcaacatgtacaagatgggg
ttttgccccaatggccctaattgccggtacaaacatgtcaagctacctgggccgccacct
cctgttgaggaagttctacagaagattttgcagatgcgctctttcaacagattcggtccg
aatagaaacaataactataatcagcagggtgagagacctcaacatccacagggttctggg
ttgcctaaccaaaatgtggcagaaaatactactgctacggctccagcaactggtggacag
caagcacaaatggcgaatcaacagcctccacagcagcagcataagccgaatacaaatgac
caggtccaaggtgcttcaaacggccatcaaactactagaatcgcaacaccgcttccacaa
gggccatctaggtacttcattgttaaaagttgcaatcgggagaatctggaaatatcagtt
cagcagggaatttgggccacccagaggagtaatgaagctaaacttaatgaagcttttgaa
tccactgagaatgttattttaatattctcaatcaatagaactcgccatttccaggggtgt
gcaaagatgacttctaggattggtggctacattggtggcggaaattggaaatctgctcat
ggaacagcacattatggtcggaacttctctatgcagtggcttaagctctgtgaactatca
tttcagaaaactcatcatctccgcaatccatacaatgataatcttccggttaagatcagc
agagattgccaggaactagaacctttcattggtgagcagttggcttccctgctttatcta
gagccagacagtgaacttacggctatgctaattgcagcagaggctaagagagaagaggaa
aaggcaaagggagtcagtgctgacgaggcagctgataatcaagatatcgtgctgtttgat
gacaatgaagaagaggaggaagaggaaagtgaggaggaggaagaaggcaatggccaagag
tctcaagggaggggaagaggaagggggatgatgtggccacctcaaatgccaatgatgcgt
gggccaatgatgggagggcgtttccctcccaacatgattggcgacggctttggttttggt
ggcggcttcggcttgcccgatcctttcggcatgccacgtggtttcccgccctttggtggc
ccaaggttccctgttgactttgctagaggccctatgcctggtatggccttcacgggcagg
cctccgcagcctttccccctaggcctcgacatgatgatgggccccggccgtggcccgatg
atgggaggcatgggaatgggcgggccgggacggcctaaccgccccattggtatggcgccc
ttcatgccccctccacctccgaacaaccgccccagcaagcgggagcagagaaggccgggc
ggcgaccgtggcgacaggttcgagacgacatcagatcaggggagcaggggccatgagaac
actttgaactctggagctgagggagccagatcgcagcccggtgacaggtacggcagaaac
gccctccgggacgatgacagcgagagcgaagaggaagcagccccgaggcggtcaaggaaa
cggtag
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