KEGG   Panicum virgatum (switchgrass): 120668457
Entry
120668457         CDS       T07260                                 
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120668457
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120668457
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120668457
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     120668457
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40_WDHD1_1st WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_EDC4L Beta-prop_HPS5
Other DBs
NCBI-GeneID: 120668457
NCBI-ProteinID: XP_039804109
LinkDB
Position
4N:complement(18578523..18594967)
AA seq 1254 aa
MASPSGNPNPAPSAPFELSKLFRPPPNPNHPTTAPSPTGIFPGAPGPATGPPPTGPYSYP
PATPPFHRGPYLHYPNDPHGFHHPAAAAFAIANPTANPIPNPGPGPNPGARLMQLLGNTA
PTHLESALAMPPSSEFSAASAAVLPASSSAPPARMPSSKMLRGRLLGPGDRVVHDVDSRL
PGEAEPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSLLRG
HTQRVTDMAFFAEDVHRLASASVDGRVYVWKIDEGPDEENKPQISGKIEITIQIIGDAET
YHPRICWHSHKQEILYVGVGNCILRIDITKVGRGRDFNTEEPLRCPLDKLIDGVSVVGKH
GGDITDLSISQWMTTRLAXASKDGTVKVWDDRRVAPLSVLKPHDGQAVYSVSFLTAPERP
NHINLVTSGPLNREVKIWASTNEEGWLLPSDLETWKCTQTLELVSSLEHRSEEAFFNQVA
VLPHASLILLANAKKNAIYTVHVEYGQDPASTRLDYIADFTVTMPILSLTGTHETHPDGE
QVVQVYCVQTMAIQQYGLELSLCLPPTADNTGSGRDPAISHLNERLPEMAALAPSTGTTP
VESSIAVSTKPSNDSQGTALTSKMNQAGSPVVLSRHPSVGDRDRDADQSSFGRKDSFGKE
EPRDVRSDGVVTSAETFASGTSQNVEAEAKHVDVRKSNHTVELEVGKETQILPEKKERPV
MPSEQTVDAVSERTITDKFSVEDSQPLPDRSVPTLLKQSSGAGDESVVKRATEASEGTER
PCALRDLPLPSTTNEGKIIHPQVSGQLSPSTSTFNSADSSQEPRINENPPIDPSLQTAAI
QGTLQQLMTTYSNLQKQLSMLVSAPIAKEGKRIEASLGRNMERSIKANIDAMWARFQEEN
ARHEKSERERMQQMATLIATSVNKDIPVMLEKSLKKEISSLGPAVARATAPIIEKSLSSA
VSDSLQKVLGDKVVNQLDKSISTKLEASVARQIQTQFHTSAKQPLQDAFRSSFELSVIPA
FEQSCKKIFEQVDGSFQKGMSEHSAAIQQHVLTAHTPLAQTLREAINSASAMNQGAASEL
LDGQRKLLSLFASASPTSQSTGALQPSNGPVDAPLDPMKELGRLIVERKFDEAFTMALQR
SDVSIVSWLCSQVDLQALCGTVPIPLNQGVLLALFQQLACDIANDTSRKLQWMTNVAVAI
QPTDPIIAMHVRPIFEQVYGVLAHQRSLPTTNASDAKKISLIMHVITSVLMSHK
NT seq 3765 nt   +upstreamnt  +downstreamnt
atggcttctccgtcggggaatcctaaccccgcccccagcgcccccttcgagctcagcaag
ctcttccggcccccgcctaaccctaaccaccccaccaccgccccgagccccaccggcatc
ttcccgggcgcgcctggccccgctaccgggccaccgcccacagggccctactcctacccg
ccggccaccccgcccttccaccgcggcccctacctccactatcccaacgacccccacggc
ttccaccaccccgccgcggccgccttcgccatcgctaaccccaccgcaaaccctatcccg
aacccaggcccgggcccgaacccgggggctcggctcatgcagcttctcggcaacaccgcg
cccacccacctggagtcggcgttggccatgccgccctcgtcagagttctccgcggcctct
gcggcggtgctcccggcgtcatcatccgcgccaccggcgaggatgcccagcagcaagatg
ctgcgcgggaggctgctggggcccggggaccgagtggtgcacgacgtggactcgcggctg
ccaggggaggcagagccgccacagctggaggtgacgcccataaccaagtacacctcggac
cccgggctggtcctcggcaggcagatcgccgtgaacaggacgtacatcgtgtatgggctt
aagctaggcaacatccgtgtgctcaacattaacactgcgctccgctccctccttcggggg
cacacacagagggtgacggacatggccttttttgcagaagatgtccatcgtctagcaagt
gcaagtgtagatgggcgggtatatgtttggaagattgatgagggacctgatgaggaaaat
aaacctcaaatctcaggaaagattgaaatcaccatccagattataggagacgctgaaacc
tatcatccgagaatatgttggcactctcataagcaagagattctgtatgttggagttggg
aattgcatcttaagaatagacataacaaaagtgggaagaggaagagacttcaatacggaa
gagcctctaagatgcccacttgacaagctcattgatggtgtgagcgtagttggtaaacat
ggtggagacattactgatctctccatatctcaatggatgactacacgtctggcttgagca
tcaaaagatggcacggtaaaggtctgggatgatcgcagggtagcccctctgtctgtgctg
aaaccacatgatggtcaagctgtttactcggtttctttccttacagcacctgaacgacca
aatcatataaatcttgttacatcaggcccactcaaccgagaagtaaaaatttgggcctcc
actaatgaagaaggctggttgttgccaagtgacttggagacatggaaatgcactcaaacg
ttggaacttgtaagttctctggaacataggtccgaggaggcatttttcaaccaagttgca
gtgttgccacacgctagccttatattgcttgcaaatgccaaaaagaatgctatttatact
gtgcatgttgagtatggtcaagatcccgcctcaactcggttggactacatagcagatttt
actgttactatgcccattttgagtctcacgggaacacatgaaacccatcctgatggtgaa
caagttgttcaagtttattgtgtccagacaatggctatccagcagtatgggttggagtta
tcgctctgtcttcctcctacagctgataacactggatctggaagagaccctgctatttct
catttaaacgagaggcttccagaaatggcagcactggcgccttccacaggaactactccc
gttgaatcttctattgctgtttcaactaagccatcaaatgacagtcagggcacagctctt
acatcaaagatgaatcaggctggatctcccgttgtcttaagtagacatccttcggtgggt
gatcgtgatcgtgatgcggaccagtcatcttttggtagaaaggatagctttggaaaggaa
gagccgagagatgtccggagtgatggtgtagtcacttctgcagaaacatttgcaagtggc
acctcacagaacgtggaagcagaggcaaaacatgtagatgtgagaaaatcaaatcatact
gttgaacttgaggttggtaaggagacccaaattcttcctgagaaaaaagagagacctgtc
atgccttcagagcaaactgtagatgctgtcagcgaacgcacaataactgacaagttcagt
gtagaagattcacagcctctgcctgatagatcagtaccgactcttttgaaacagtcttct
ggggctggagatgaaagtgttgtgaagagagcaactgaagcttctgagggaactgaacgt
ccttgcgccttaagggatttaccattaccctcaactaccaatgagggaaaaatcatacat
cctcaagtatctgggcaattatctccttctacaagcacattcaactctgctgattcctcg
caagaacctcgaatcaatgagaaccctcctattgatccctccctgcaaactgcagctatt
caaggaacactgcaacagcttatgaccacatatagtaacctgcaaaagcagttgagtatg
cttgtatctgctccaattgcaaaggaaggcaaaagaattgaggcatcacttggtcgaaac
atggaaaggtccatcaaggctaacattgatgccatgtgggcccgtttccaggaagaaaat
gcgaggcatgaaaaatctgaaagagagcgaatgcagcagatggctactctaatcgcaact
tctgtaaacaaggatattcctgttatgctggagaagtcattaaagaaagaaatatcttca
ctgggacctgctgttgctcgagcaaccgcacctatcattgagaagtccttgtcttctgct
gtgtctgattcacttcagaaagtgctgggtgacaaggttgttaaccagctagataagtct
ataagcacaaaacttgaagctagtgttgctaggcagatccaaacacagttccatacatcc
gccaagcagccacttcaggatgcgttccgctctagctttgagttgtcagttattccagcg
tttgaacaatcatgcaagaaaatatttgagcaagtagatggttcatttcagaaaggcatg
tctgagcacagtgctgctatccagcagcacgtcctgacagcacatactccattagcacaa
actctaagggaagcaatcaattcagcatcggcaatgaatcagggtgctgcatcagagtta
cttgatggccagcgcaagcttttgtcactatttgcatcagcgagcccaacatcacagagc
acaggtgctttgcagcccagtaatggaccggttgatgctccattggatcctatgaaagaa
ctagggcgactgattgtggagcggaaatttgatgaggcatttacaatggctcttcaaaga
agcgatgtctctatagtttcttggttgtgttctcaggttgatttgcaagcattgtgtggg
acagttcccatccctctgaaccaaggggttctcctagcccttttccagcagctagcgtgt
gacattgccaacgatacgtcccggaagcttcaatggatgacaaatgttgctgtggcaata
caaccaacagatccaataatcgcaatgcatgtaaggccaatatttgaacaagtctatggt
gtcctggcacaccagcggtcgctgccaacaaccaatgcatcagatgcgaaaaaaatcagc
ttaatcatgcatgtgatcacctcagtcctgatgagccacaagtga

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