Panicum virgatum (switchgrass): 120668536
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Entry
120668536 CDS
T07260
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2-like
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120668536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120668536
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
120668536
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
120668536
NCBI-ProteinID:
XP_039804206
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Position
4N:47185891..47190481
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AA seq
541 aa
AA seq
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MGKRDREEVDELADGGAAEKRPREEGASLLGLASYEDDEEEEAARGQANGHRAEGNGEEG
EDEDDEEDDVRRAPERRPRRVELRRDCPYLDTVNRQVLDFDFEKFCSISLSNLNVYACLV
CGKYFQGRGLKSHAYTHSLEAGHHVFINLQTERAYCLPDGYEINDPSLEDIRHVLNPRFT
KEQVLNLDKNKQWSRALDGSNYVPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN
YQHSKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASNKRFQIGVQSDPVEFMSW
LLNTLHAKLKSSKKKNRSIIHDCFQGELEVVKEVHRKHIMEKKEDGAELNGDAGSAVGAA
DGTVMETSKVPFLMLGLDLPPPPLFKDAMEKNIIPQVPLFNILKKFDGETVTEVVRPSIA
RMRYRVTRLPKYLILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPKPKENDKLRS
KYDLIANIVHDGKPGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMVALSEAYMQIYEQH
E
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaacgcgaccgcgaggaggtggacgagctcgccgatgggggcgccgccgagaag
cgcccgcgcgaggagggcgcgtcgctgctagggctcgcgagttacgaggatgacgaagag
gaggaagcggccaggggccaggcaaatggccatcgcgctgaggggaacggggaggagggc
gaggacgaggacgacgaggaggacgatgtgaggagggctccggagaggcggccgaggcgg
gtggagctgcgccgtgactgcccttacctcgacaccgtgaacagacaggtccttgatttt
gattttgagaagttctgttcaatatccttgtcaaatttgaatgtgtatgcgtgcttggtt
tgtggaaagtatttccaaggaagaggcttgaaatctcatgcttatacgcacagtcttgaa
gcaggccatcatgtgttcattaatcttcaaaccgagagggcttactgtcttcctgatgga
tatgagataaatgatccatcactagaagatattcgccatgttctgaacccaaggttcacg
aaagagcaggttctaaatctcgacaagaacaagcagtggtctagagcacttgatggttcc
aattatgtacccggaatggtcggtcttaacaacatcaaggagacagattttgtgaatgtc
acaatacagtcattaatgagagttactcctctgagaaatttctttcttatccctgaaaat
tatcaacatagcaaatcaccattggttcatcgttttggggaactgacacgcaagatttgg
catgctaggaacttcaaggggcaggttagtccccacgagtttctgcaagctgttatgaag
gccagcaacaagcggtttcagattggtgtacagtcagatcctgtggaatttatgtcatgg
ctcttgaatacactgcatgcaaaattaaaaagttcaaagaagaaaaacagaagcataata
catgattgctttcagggagaacttgaagttgttaaggaagttcacaggaagcatataatg
gaaaaaaaagaagatggtgctgagctcaatggtgatgcaggttcagcggttggagcagca
gatggtactgtcatggaaacatctaaggtcccattcttgatgctcggtcttgacctgccc
cctccacctcttttcaaagacgccatggagaaaaatatcatcccacaggtaccgttgttt
aacatactgaagaagtttgatggtgagactgtgacagaggttgtccgcccatccattgct
cggatgaggtaccgtgtcactagacttccgaagtatctgatccttcatatgcgacggttc
actaaaaataacttcttcgtcgagaaaaaccctactctagtaaattttcctgtgaagaat
ttggaattgaaggattacattccattacccaagcccaaagaaaatgacaagctacggtcg
aagtatgaccttatagcaaacattgtccatgatgggaagccaggtgaaggatgctacaga
gtgtttgtacagcggaaatcagaagaggcctggtatgagatgcaggatctccatgttact
gaaactcttcctcaaatggtagctctttcagaagcctacatgcaaatatatgagcagcat
gaatga
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