Panicum virgatum (switchgrass): 120668852
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Entry
120668852 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP54-like
KO
K14308
nuclear pore complex protein Nup54
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120668852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120668852
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120668852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
CTD
Motif
Other DBs
NCBI-GeneID:
120668852
NCBI-ProteinID:
XP_039804584
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All DBs
Position
2K:complement(16006737..16011772)
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AA seq
416 aa
AA seq
DB search
MFGTPSSSPLFGTPSSTPAFGTPSTTPAFGTPSSTPAFGATPSTPAFGTPSSTPAFGTPA
FGTPSSTPAFGTPSSTPAFGAASSAPAFGGLSAFGTPLSTSAFGAPSSTPAFGASPSPSP
FGFQQQATPAPSPFGLLGGGGGQITTQMAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYA
FRHLLFSVTEPSQRAKPVAASDIMWAEAMGKLECMDTADRERLWPQLVQGFKDLSHRLKL
QDEVIVSDTDRLSMTNSNVKRLQRHFQAHTCPWIQRLKQQELVIQRRLLRFVRIVETLEN
RGYRSPLTKEEADLRERLVAILKQLKGPGADLSKRVNTLLSTSNLLASTGGPVYIPNSAK
VDERSVTDLLETLQQQTEAIAKLGNVLKRDIRDLEIIQSNDTDMAEDSVGRRALKI
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgttcgggaccccttcctcctctcccctcttcgggaccccatcctccacaccagccttc
gggaccccctccaccaccccggccttcggcacgccttcctccacccccgcattcggcgcg
acgccgtccaccccggccttcggcaccccgtcgtcgacgcccgccttcgggaccccggcg
ttcgggaccccatcgtcgaccccggcgttcgggacgccgtcgtcgactcccgcgttcggg
gccgcgtcctcggccccagcgttcggcgggctgtcggctttcgggacgccgttgtcgacc
tcggcgttcggcgcgccctcctcgacgccggcattcggcgcgagtccctcgccctcgccc
ttcgggttccagcagcaggcgacgccggccccgtcgccgttcggcttactcgggggaggg
ggcgggcaaatcaccacccagatggcccccgtcgctcccctgccgctctccccgtccgac
cgcgacatccaggctatcgtggatgcgtacaaggaggaccccgggaacccccggtatgct
ttcaggcatctgttgtttagcgtgacagagccttcgcaaagggcgaagccagttgcagca
tcagatattatgtgggcggaagcaatggggaagcttgaatgcatggacactgcagatagg
gagaggctgtggcctcagcttgtgcaggggtttaaagacctttcccaccggctcaagctt
caagatgaagtcatagtttcggatactgatagattgagcatgactaactctaatgttaaa
aggctgcaaaggcatttccaagctcacacatgtccatggattcagcgattgaagcagcaa
gagctggttattcagagacgtcttttaaggtttgttagaatagtggagacattggagaat
aggggttaccgcagtcctttaacgaaggaggaagctgacttacgtgaaagattggttgcc
atattaaagcagctaaaaggacctggtgctgatctgtctaagagagttaatacacttctt
tcaacatcaaatcttctggctagcactggtggtcctgtatatattcctaattcggccaaa
gttgatgaacgtagtgttacagatcttcttgagaccttacagcagcaaacagaggcaatt
gccaagttaggtaatgtgttgaagagggatatcagggacctggagatcatccagtcaaat
gacacagatatggctgaagacagcgttgggaggagggcactgaagatataa
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