Panicum virgatum (switchgrass): 120668855
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Entry
120668855 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like isoform X1
KO
K12897
transformer-2 protein
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120668855
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120668855
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120668855
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120668855
Spliceosome [BR:
pvir03041
]
Common components
Common spliceosomal components
SR proteins
120668855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120668855
NCBI-ProteinID:
XP_039804583
LinkDB
All DBs
Position
4N:49701016..49708895
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AA seq
275 aa
AA seq
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MADSPRRRYSRSPSPYGRGHPKARSRSRSPARSQSRSPVPDPRSQARSRSRSHEREEAVN
RGNTLYVTGLSSRVTEREIKDYFSKEGRVVGCHVVLEPHTRVSRGFAFVTMDTMEEADRC
IKYLNNSVMEGRNITVEKSRRGRPRTPTPGSYLGHRYERRDRGRYRRGYGGGRDEYYGNG
GGGGYGYRRSPPPMYSYRESRDYPPYRDTRDYPPYRDYSPQRDPRDYYESRGGRGYSPPP
YGGGRSRRDRSISPYRMPERGYGGGRRAGGGGYDR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggccgattccccgcgaaggaggtactcgaggtccccttccccttacggcagggggcac
ccaaaagcaaggtcaaggtcacggtctccagctcggtctcagtctaggtcacctgtgcct
gatcctagatctcaggcaaggtcgagatctagaagccatgagagggaggaggctgttaac
cgtggaaatactttatatgtgactggactctcttctagggtgactgaaagggagattaaa
gattatttctcgaaggaaggaagggtggttggttgccatgttgttcttgagccccataca
cgtgtttcgcgtggatttgcctttgtcaccatggacaccatggaagaagctgaccgttgc
atcaagtatcttaacaattctgtgatggaaggtcgaaacattacagttgaaaagtcacgc
cgtggtcgcccaaggacaccaactcccggaagctatcttggtcaccggtatgagcgtaga
gaccgtgggagataccgccgtggctatggtggtggtcgtgatgagtattacggcaacggc
ggcggcggcggctatggctaccgcaggtctccacctcccatgtattcctacagggagagt
cgggactaccctccgtatagggatactcgagactaccctccctacagggactactccccc
cagagggacccccgagactactatgagagcaggggcggccgggggtattccccgccacca
tatggcgggggcaggtcaagaagggatcgatcgatctcgccgtatcggatgccggagaga
ggctatggcggcggccgccgagccggtggcggtggctacgacaggtaa
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