Panicum virgatum (switchgrass): 120668915
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Entry
120668915 CDS
T07260
Name
(RefSeq) phytoene synthase 1, chloroplastic-like isoform X1
KO
K02291
15-cis-phytoene synthase [EC:
2.5.1.32
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120668915
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120668915
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.32 15-cis-phytoene synthase
120668915
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Squalene/phytoene synthase
120668915
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
120668915
NCBI-ProteinID:
XP_039804654
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All DBs
Position
4N:complement(50196363..50199983)
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AA seq
455 aa
AA seq
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MLPAVALQASVQPQQHMPSRSSISSVVVAIRDNRHMAIILVRAASPGLSDAHVHGSLLQC
SSPLQLKRRVPPRSSGRWMLCSLRYACLGLDPGEIGRTSAVYSSLAVNPAGEAVVSSEQK
VYDVVLKQAALLKRQLRSQTPPVLDVRPQQLDMPRNRLNLKEAYARCGDICEEYAKTFYL
GTLLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPTALDRWEKRLEDLFAGRPYDMLD
AALSDTISRFPIDIQPFRDMIEGMRSDLRKARYKNFDELYMYCYYVAGTVGLMSVPVMGI
APESKATTESVYSAALALGIANQLTNILRDVGEDARRGRIYLPQDELAQAGLSDEDIFNG
VVTNRWRNFMKQQIKRARMFFEEAERGVTELSQASRWPVWASLLLYRQILDEVEANDYNN
FTKRAYVGKGKKLLALPVAYGKSLLLPVSLRNSQT
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctgctgttgccctacaagcaagtgtgcaaccgcagcagcatatgccaagtagg
agcagcatcagcagtgtggtggtggcgataagagataacagacatatggccatcatcctt
gtacgagcagcgtcgcccgggctctccgacgcccatgtccatgggagcctcctccagtgc
tcctcccccctgcagctcaagaggagggtgccgccacgcagtagtggccgctggatgctc
tgctcgctcaggtacgcgtgccttggcctcgacccgggggagattggccggacctccgcc
gtgtactccagcctggccgtcaacccggcgggagaggccgtcgtctcctccgagcagaag
gtctacgacgtcgtgctcaagcaggcggcattgctcaagcgccagctgcgctcgcagacg
ccgcccgtcctcgacgtcaggccccagcagctggacatgccgcgcaaccgcctcaacctc
aaggaggcctacgcccgctgcggcgacatctgcgaggagtatgccaagactttttacctc
ggaactttgttgatgacagaggagaggcgccgcgccatatgggccatctatgtgtggtgt
aggaggacagatgagctcgtagatgggccaaacgccaactacattacgccaacggctttg
gaccggtgggagaagagactagaggatcttttcgcgggacgcccttacgatatgcttgac
gccgctctttctgataccatctcaaggttccccatagacattcagcccttcagggacatg
attgaagggatgcggagtgaccttagaaaggcgaggtataagaacttcgacgagctctac
atgtactgctactatgttgctggaactgtgggattaatgagtgtacctgtgatgggcatc
gcacctgagtctaaggcaacaactgaaagcgtgtacagtgctgccttggctctcggaatt
gcgaaccaactcacaaatatactccgggatgtaggagaggatgctagaagaggaaggata
tatttaccacaagatgaactggcacaggcagggctctctgatgaggatatcttcaatggt
gtcgtgacaaaccgatggagaaatttcatgaagcagcagatcaagagggccaggatgttt
tttgaggaggcagagagaggggtgactgagctctcacaggctagcagatggccagtatgg
gcctccctactgttgtaccggcaaatcctggatgaggttgaagcaaacgactacaacaac
ttcacaaagagggcttatgttgggaaagggaagaaactgctagcacttcctgttgcatat
gggaagtcactactgctaccagtttcactgagaaatagccagacctag
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