Panicum virgatum (switchgrass): 120668920
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Entry
120668920 CDS
T07260
Name
(RefSeq) protein argonaute 1D-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120668920
03036 Chromosome and associated proteins [BR:
pvir03036
]
120668920
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120668920
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120668920
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120668920
microRNA pathway
RISC loading complex
120668920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Gly-rich_Ago1
Motif
Other DBs
NCBI-GeneID:
120668920
NCBI-ProteinID:
XP_039804663
LinkDB
All DBs
Position
4N:50216451..50233471
Genome browser
AA seq
1049 aa
AA seq
DB search
MGSWRPKLPGFGEGSQDAEPGGGRRGPGRGFRGRGGSYHQQFPQGGRGAGYYQHGQGAAS
QPRGAMVSQQWRPAGPAAGHLGHGQAYREVQPPQYYGGGRVGRGSGPSSIAPELRQAMET
SHEPDNISPEAGSPELSPPASTLEVSDQLKDLSIQEESSTGQEIVQAFPVSHKSYKFPHR
PGNGSIGTRCLVKANHFFAELPDKDLHQYDVSITPDVTSRIRSRSVMEELVKLHKMSYLG
GRLPAYDGRKSLYTAGPLPFTSKEFHITLLEEDDGSGMERRQKTYKVVIKFAARADLHRL
EQFIAGRQAEAPQEALQVLDIVLRELPTARYEPFGRSFFSPDLGRRRSLGEGIESWRGFY
QSIRPTQMGLSLNIDMSATAFFEPLPVIDFVALLLNTDIHSRPLSDAERVKIKKALRGVK
VEVTHRGNMRRKYRVAGLTPQATRELTFPVDQGGTVKSVIQYFQETYGFAIQHTYLPCLQ
VGNQQRPNYLPMEVCKIVEGQRYSKRLNQSQIRALLEETCQRPHDRERDIIQMVKHNSYH
EDPYAREFGIKISERLASVEARILPAPRLKYNETGREKDCLPRVGQWNMMNKKMVNGGRV
RSWICVNFARNVQESVASVFCRELARMCQASGMDFALEPILPPMYANPAQVERALKARFH
DAMNMLGPQRKELDLLIGILPDNNGSLYGDLKRVCEIDLGIVSQCCCAKQVFKMNKHILA
NLALKINVKVGGRNTVLADAVSRCIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQ
DWPEVTKYAGLVSAQSHRQELIEDLYKVTQDPQRGTICGGMIRELLISFKKSTGQKPQQI
LFYRDGVSEGQFYQVLLHELDAIRKACASLEANYQPQVTFIVVQKRHHTRLFAHNHNDQN
SVDRSGNILPGTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTL
TNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDSSDSGSLASGACGGGAPSSSST
SRSTRATTGGAVRPLPALKDSVKSVMFYC
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgggatcttggagaccaaaactgcctgggtttggtgagggatcacaggatgctgagcca
ggtggtggtcggagaggtcctggaagaggttttcgtggccgtggtggctcctaccatcaa
caattccctcaaggtggtcgtggagctggctactaccagcacggacaaggtgctgcatct
caacctcgtggagcaatggtgtctcaacagtggcgtcctgctggccctgctgcagggcat
ttggggcatggtcaggcttacagagaagtgcagccaccacaatactatggtggtggtaga
gttggacgcgggtcaggcccgtcctccatagctcccgagctgcgccaagcaatggaaact
tcacatgaaccagataacatctcaccagaagcaggctctccagagctatcaccacctgct
tctactctggaagtctcagatcagctgaaagatttgtccatacaggaggaatcaagcacg
ggccaagagattgtgcaagcatttccagtgtcgcacaaatcatataagtttcctcaccgt
ccaggaaatggaagcattggaaccaggtgtttggtgaaggcaaatcacttctttgctgaa
ctgcctgacaaggatcttcatcagtatgatgtttcaatcaccccagatgttacatcacga
attcggagccgttctgtgatggaagaattggtgaagctgcacaagatgtcatacttggga
ggtcggcttccagcctatgatggtagaaagagcctatacacggctggcccattgccattc
acttcaaaagaatttcacatcactctacttgaggaagatgatggttctggcatggagagg
cgtcagaaaacatacaaggtagtcattaaatttgctgcaagagctgatctccatcgtctt
gagcagtttattgccggaaggcaggcagaggcccctcaagaggctttgcaagttcttgat
attgtcctgcgggagctgccaacagcaagatatgaaccatttggtcgatcttttttctct
cctgacctggggaggaggcgatcccttggtgagggaatagaaagctggcgtgggttttac
cagagcattcgtcctactcagatgggcttatcattgaatattgatatgtcggctactgct
ttctttgagccattacctgtgatagattttgttgcgctgcttttaaatactgacatccac
tcaaggcccctctcagatgctgaacgtgtcaagatcaagaaggccttaagaggagtgaag
gtggaagttacccaccgtggtaacatgcggcggaagtatcgggtagctggtttaacacct
caggcaactcgagagctaactttccctgttgatcaagggggcacagtgaagtctgttata
caatattttcaagagacatatgggttcgccatccagcatacctacctgccgtgcctgcag
gttggcaatcagcagcgtccaaattaccttccaatggaggtctgcaaaatagtggaggga
cagaggtactccaaaagattaaaccagagtcagataagagcccttttagaggagacatgt
caacggccacatgatcgggagcgtgacataattcagatggtgaaacataactcttaccat
gaggatccttatgctagagagtttggcattaagatcagtgagcgtttggcttcagttgag
gcacggattttacctgctcctaggctcaaatataacgagactggcagagagaaggactgc
ttgccaagggttgggcagtggaatatgatgaacaagaaaatggtaaatggtggtagagtc
aggagctggatctgtgtcaattttgctcgaaatgtgcaagagagtgttgctagtgtattc
tgtcgtgaacttgctcgcatgtgccaggcctcaggaatggactttgccttggagcctatt
cttccacctatgtatgcaaatcctgctcaagtggagcgagccctgaaagccaggttccat
gatgcaatgaacatgcttggaccacagcgcaaggaacttgatttgcttataggaatactt
cctgacaacaatggttctctttatggtgatttgaagcgtgtctgcgaaatagaccttggg
atagtttcgcagtgctgctgcgcgaagcaagtttttaagatgaacaaacatatactggca
aatcttgctctgaagataaatgtcaaggttggaggaaggaacactgtacttgctgatgca
gtatcaagatgcattcctttggtgactgacaggcccaccatcatatttggtgcggatgtg
acccatcctcatcctggtgaagatagcagcccttccattgctgctgttgtggcctcccaa
gattggcctgaggtgacaaagtatgctggtttagtttctgctcaatctcacaggcaagag
ctgatagaggatttgtataaggtgacacaagatcctcagaggggaaccatctgtggtggc
atgataagggagcttcttatatccttcaaaaagtcaactggccaaaagcctcagcagata
ctattctacagggatggtgtgagtgaagggcagttttaccaagttctacttcatgagctg
gatgcaatccgaaaggcatgtgcatcgctggaagcaaattaccagccacaggtgactttt
attgtggtccagaaacggcatcatacaaggttgtttgcacacaaccacaatgatcagaat
tcagttgacaggagtggaaacatacttcctggtacagttgtggactcgaagatctgccac
cctacagagtttgacttcttcctgtgcagccacgctggcatcaagggcacaagccgccct
gctcactaccatgtcctgtgggatgagaacaacttcacagctgatgcattgcagaccctt
accaacaacctctgctacacttatgcgaggtgcacgcgctctgtatctattgtcccacca
gcgtactacgctcatctggctgctttccgtgcccggttctacatggagcccgacagctcg
gacagtgggtcgctggcaagtggcgcctgtggaggtggggcgccgtccagttcgtcgaca
tcccgcagcacccgcgcgaccaccggcggagccgtcaggcccctccccgcgctcaaggac
agcgtcaagagcgtcatgttctactgctga
DBGET
integrated database retrieval system
