Panicum virgatum (switchgrass): 120669010
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Entry
120669010 CDS
T07260
Name
(RefSeq) probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1
KO
K01662
1-deoxy-D-xylulose-5-phosphate synthase [EC:
2.2.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00730
Thiamine metabolism
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00096
C5 isoprenoid biosynthesis, non-mevalonate pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
120669010
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120669010
Enzymes [BR:
pvir01000
]
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.7 1-deoxy-D-xylulose-5-phosphate synthase
120669010
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GFIT
Motif
Pfam:
DXP_synthase_N
Transket_pyr
Transketolase_C
Motif
Other DBs
NCBI-GeneID:
120669010
NCBI-ProteinID:
XP_039804772
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Position
4N:complement(3019947..3025094)
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AA seq
721 aa
AA seq
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MDTAFLRSPLARNLVYDEFAVLHSPSYRFHPLRYSRCNPTNSTPCQTLSASPSRGLTQRV
AALPNVDDFFWEKDPTPILDTIDAPIHLKNLSSKELKQLADEVHSEISFIMSRKCQPCGP
GRSVVELTIAIHYVFNAPMDKILWDAGQHAYAHKILTGRRSLFHTIQQKNGLSGFTSRFE
SEYDPFGAGHGCNSLSAGLGMAVARDVNGRKNRIVTVISNWTTMAGQVYEAMGHAGFLDS
NMVVILNDSCHSLLPKADGQPKMSVNAFSSAVSKIQSSKGFRRFREAAKGLTKWFGKGMH
EFAAKVDEYARGMIGPHGATLFEELGLYYIGPIDGHNIDDLICVLKEVATLDSTGPVLVH
VITGTEIDTGGNIRSEITPNDEGPPNSSHDLLNFLETGLSRTYNDCFVEALTAEAENDKR
IVVVHGGMGMDRSLRLFQSRFPDRFFDLGIAEQHAVTFSAGLACGGLKPFCIIPSTFLQR
AYDQIVEDVDMQKIPVRFAITNAGLVGSEGPTNSGPFDITFMSCLPNMIVMSPSNEDELI
DMVATAAMVEDRPICFRYPRGAIVGTSGTLTYGNPLQIGKGEILVEGKEIAFLGYGEVVQ
RCLIARSLLSNFGIQATVANARFCKPLDLDLIRTLCQQHSFLITVEEGTVGGFGSHVSQF
ISLDGLLDGRIKWRPIVLPDRYIEHASLAEQLDLAGLTAHHIAATALTLLGRHRDALLLM
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacacggcgtttctgcgttctccgcttgctcgcaatctagtttatgacgagtttgcc
gtgcttcactccccaagctaccgtttccatcctctgcggtattccaggtgcaatccgaca
aactcgacgccctgccaaacgttgtctgcttcgccatcaaggggcttaactcagcgagtg
gccgcattacctaatgttgatgattttttctgggagaaggatcctactccgatcctggac
acaattgatgcgcccattcatttgaaaaatctatctagtaaggagctcaagcagttagct
gatgaagttcattctgaaatatctttcataatgtccagaaaatgccagccatgtggtcct
ggtcgctcagttgtggagctgacaattgctatacattatgtgttcaatgcaccaatggat
aagatactgtgggatgctggtcagcatgcgtatgcacacaagattctcacaggaaggcgc
tctctctttcatactattcaacagaaaaacggcctttctggttttacatctcgatttgag
agcgagtatgatccgtttggtgctggacatggatgcaatagtctttctgctggccttggg
atggcggttgcaagggatgtaaatgggagaaaaaatcgaatagtgacagttataagtaat
tggacaaccatggctggccaggtgtatgaggcaatgggtcatgctggtttcctcgattcc
aacatggtagttattctaaatgatagctgtcactccttgcttcctaaagctgatggccag
ccaaagatgtcagtcaatgccttttctagtgctgtcagcaagattcaatccagcaaagga
tttaggaggtttagggaggctgcaaagggactcactaaatggtttggcaaaggaatgcat
gagtttgctgccaaagttgacgagtatgctcgtggtatgataggtcctcatggagcaact
ctttttgaagaacttggattatattatatcggtcctattgatgggcataacattgatgat
ctcatctgtgtattaaaggaagtcgcaacactagattcaactggtccagtactggtacat
gtaattactgggactgaaattgacactggtggaaatattaggagtgaaataactccaaat
gacgaagggcctccaaactcaagtcatgatcttcttaattttttagaaactggactttct
aggacatataatgattgctttgtagaagcattaacagcagaagcagagaatgacaagcgc
attgtggtagttcatggtggcatgggaatggatcgatcactccgcttattccagtccaga
ttcccagacagattttttgacctaggcatcgctgagcaacacgctgttaccttttctgct
ggtttggcctgtggaggtttaaagcctttctgcataattccatccacatttcttcagcga
gcatatgatcagatagttgaagatgtggacatgcaaaagataccagttcgatttgctatc
acaaatgctggtctggtggggtctgagggcccaactaattcaggaccatttgatataaca
ttcatgtcctgcttgccaaacatgattgtcatgtcaccatctaacgaggatgaacttatt
gacatggtggcaacagctgcaatggttgaggacagacctatttgcttccggtatcctagg
ggtgccattgttgggactagtggcaccttaacgtatgggaatccacttcagattggtaaa
ggagagattcttgttgagggaaaagagatagcttttcttggctatggtgaggtggtccag
cgatgcttaattgctcgttctcttttatcaaactttggcattcaggcaacagttgcaaat
gcaagattttgcaagccacttgaccttgatctaatcagaacgctatgtcagcagcatagt
tttcttatcacagtggaagaaggaacagttggcggctttggatcgcatgtctctcagttt
atttcactcgatggtctacttgatggccgaataaagtggcgacccattgtgctaccagac
aggtatattgaacacgcatcactcgctgagcaactcgacttggctggcctaactgctcat
cacatagctgcaaccgcattgaccctcctagggcgtcaccgagatgcacttctgttgatg
aagtag
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