Panicum virgatum (switchgrass): 120669551
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Entry
120669551 CDS
T07260
Name
(RefSeq) LOW QUALITY PROTEIN: cell division control protein 48 homolog C-like
KO
K14571
ribosome biogenesis ATPase
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120669551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120669551
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120669551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
AAA_14
AAA_22
Rad17
AAA_16
AAA_33
TIP49
AAA_2
AAA_17
AAA_28
RNA_helicase
nSTAND3
IstB_IS21
NPHP3_N
Vps4_C
AAA_18
ABC_tran
Mg_chelatase
Viral_helicase1
NACHT
Cytidylate_kin2
NB-ARC
Zeta_toxin
TsaE
Bac_DnaA
NTPase_1
AAA_3
SKI
Parvo_NS1
AAA_11
Sigma54_activ_2
AAA_7
tRNA_lig_kinase
Mu-like_Pro
iSTAND
DUF4543
Motif
Other DBs
NCBI-GeneID:
120669551
NCBI-ProteinID:
XP_039805262
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All DBs
Position
4N:715712..719890
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AA seq
576 aa
AA seq
DB search
MEAVIEELIMEVVLVPLCHPELPQRLGVRPVAGLLLHGPPGCGKTTLAHAIANETGVPFY
KISAPEVVSGVSGASEENIRGLFQKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQ
LMTCMDQFHQNIGSGGSDLDAESAEKKPGYVIVIGATNRPDAVDQALRRSGRFDREISLG
VPDENARKQILKMLTQNLRLEGEFDLFKIARATPGFVGADLKALVDKAGNLAMKRIIDER
RAQYCHSHDGNSKHDWWRQPWDAGEVEGLHITMDDFEEATKMVQPSLRREGFSSVPDVTW
DDVGGLDSLRKEFDRCIIRCIKHPEDYEVFGVNMQAGFLLFGPPGCGKTLIAKAVAHEAG
ANFIHIKGPELLNKYVGESESEVRKIFTRARTNSPCILFFDEVDALTTKRGKEGGWIIER
LLNQLLIELDGADQRQGVYVIGATNRIDVIDDAVLRPGGFGKKHYVPLPGAEEWVSILKA
HAQSKPISCDVDLAALAHHEECNNLTGADLASLVNEAAMAALEERLEFLENGTSSMSSSS
LIELSHFERALSKVKPSVSEQQIKHYEALSKRYSSN
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggtgatagaggagctgataatggaagtggtcctcgtgcccctgtgccatccg
gagctgccgcagcgccttggggttagacctgtcgctgggctgctgctacatggaccgcct
ggttgcggaaagaccacccttgcccatgccattgccaatgagactggcgtgccattctac
aagatctcagccccagaggtcgtatctggggtatctggagcttctgaggaaaacatcagg
ggcttgtttcagaaggcctataggactgctccctcgattgtattcattgatgaaatagat
gcaattgcatccaagagggagaatctgcaacgagagatggagcgacggatagttactcaa
ttaatgacatgcatggatcaattccaccagaatattggatccggcggcagtgatttggat
gcagaatcagctgaaaagaaacctggttatgtcattgtcattggagccacaaataggcct
gatgctgtggatcaagctctgcgacgttcaggaaggtttgatcgagagatatctcttggt
gttccagatgagaatgcacgaaaacaaatacttaagatgcttactcagaatctccgactc
gaaggcgaatttgacttgttcaagatagctagggccacaccaggttttgttggtgctgac
ctgaaggcgttagtggacaaagcaggcaatctagcaatgaagagaataattgatgaaaga
agagctcagtactgtcatagtcatgatgggaatagcaagcatgactggtggagacaacct
tgggatgccggtgaggtggagggcctacatattacaatggacgactttgaggaagcaaca
aagatggttcaaccatccttgagaagagaagggttttcatctgtccctgatgtcacatgg
gatgatgttggaggtcttgattcattaaggaaagagtttgaccgctgcattattcgatgt
atcaagcatcctgaagattacgaggtgtttggagtgaatatgcaagctggcttcctgttg
tttggacctccaggctgtgggaaaacactaattgcaaaagcagtggcccatgaggcaggg
gctaattttattcatatcaaggggcctgagctattgaacaagtatgttggggaaagtgaa
tcagaagtgaggaaaatattcactcgtgcgcgcacaaattccccatgcatcctatttttc
gatgaggtagatgctttgacaacaaagagagggaaagagggaggatggattattgaacgt
ctcctaaatcagttacttattgaacttgatggtgctgatcaacggcaaggtgtctatgtg
ataggagctacaaacagaattgatgtgatagatgatgctgttctacggcctggtggattt
gggaagaaacattatgtacctttacctggtgcagaagagtgggtctcaatattaaaagca
catgctcaaagcaagcccatctcatgtgatgtcgatttggctgcactggcacatcatgag
gaatgcaacaatctcactggagcagacctagcatcactggtcaatgaagcagcgatggca
gcattggaagagagattggaattccttgagaatgggacatcgtcaatgagttcctcttct
ttgatcgagctctcacacttcgaacgtgctctatcaaaggttaagccatcagtatctgaa
cagcaaattaaacattatgaggcattgtcaaaaagatactcgtcaaactga
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