Panicum virgatum (switchgrass): 120669570
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Entry
120669570 CDS
T07260
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120669570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120669570
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120669570
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120669570
RNA polymerase I system
120669570
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
120669570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
Spt5-NGN
KOW4_SPT5
KOW6_SPT51-2
KOW7_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Ribosomal_L19
Motif
Other DBs
NCBI-GeneID:
120669570
NCBI-ProteinID:
XP_039805290
LinkDB
All DBs
Position
4N:complement(8875991..8883665)
Genome browser
AA seq
1049 aa
AA seq
DB search
MARRGRDDDDDDEAEEEEDEEEAYDLDDEEEDEEDDYEEEARRGKASRGGGGGGKGGGGR
KRSREDNFIDDSAIEDEDEEEEDDDGGARPRKKGGGGVRGFFDEEAQVDEDEEEEDDGEG
EDDFINDAGANIPDEDVVRGSRRHSMPMRDEEEDIDEIERQVRERYARSTHIEYGEEAAE
VEQQALLPSVKDPKLWMVKCAIGHERETAICLMQKYIDRSDLQIKSVVALDHLKNYIYVE
AEKEAHVKEACKGLRNIYASAKITLVPIKEMADVLSVESKSVDLSRDSWVRMKLGIYKGD
LAKVVDVDNVRQRVDVKLIPRIDLQALASKLEGRETVKKKAFVPPPRFFNIDEAREMHIR
VERRRDKESGEYFEWVDNLKFKDGFLYKSVSTKSIHTNNIQPSFDELEKFRKPGDDMNGD
MASLSTLFANRKKGHFMKGDAVIVIKGDLKNLEGWVEKVEDETVHIRPKISDLPKTLAFN
EKELCKYFKPGDHVKVISGVQEGATGMVVKVEGHVLIILSDTTKEHIRVFADHVVESSEI
TTGITRIGDYELHDLVLLDNLSFGVIIRVEAEAFQVLKGVPDRPEVVLVKLREIKSKIDR
RASAKDRSNNIISAKDVVRVVEGACKGKQGPVEHIHKGILFIYDRHHLEHAGFICAKAQS
CLLVGGSTGGHRGNVMDTADARLGALRSPASILQSPGRLPPRGPHMNYGGRFGGGRGGRG
HDALVGKCIKIKSGPYKGYRGRVKEVTGALVRVELDSLMKIVTVKRDDIADTPTVATPFR
EPRYSLGGETPMHPSRTPHHAYQTPIRDPGATPIHDGMRTPMRSRAWAPMSPPRDNWEDG
NPATWSSSPAYQPGTPPARPYEAPTPGSGWANTPGVSFNDAPTPRDNYANAPSPYVPSTP
VGQPMTPNSAAYLPGTPGGQPMTPGNVGMDIMSPIIGGEGEGTWLLPDVLVNVLRGGDDG
PGVVREVLGDGSCRVALGSSGNGDVVTVLPNEVEVIRPKKSDRIKILNGNFRGYTGKLIG
IDGSDGIVKLDDTYEVKILDMVILAKLAT
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccgcggccgcgacgacgacgacgacgacgaggcggaggaggaggaggacgag
gaggaggcctacgacctggacgacgaggaggaggatgaggaggacgactacgaggaggag
gccaggcgcgggaaggcctcccgcggcggcggcggcggcggcaagggcggcggcgggcgg
aagcggtcgcgcgaggacaacttcatcgacgactcggccatcgaggacgaggacgaggag
gaagaggacgacgacggcggggcgcggccgaggaagaagggcggcggcggggtgcggggg
ttcttcgacgaggaggcccaggtcgacgaggacgaggaggaagaggacgacggcgagggc
gaggacgattttatcaatgatgctggggccaatattcctgatgaggatgttgttaggggc
tcaagacgccattcaatgcctatgagggatgaagaagaggacattgatgagattgagaga
caagtacgggagagatatgcaagatccactcatattgagtatggtgaggaagctgcagaa
gtggaacagcaagctctgttgccttctgtgaaggatcctaaactatggatggtcaaatgt
gcgattggacatgagagagagactgcgatttgtctgatgcaaaagtacatcgataggtca
gatcttcagataaagtctgttgtggcgttggatcatctaaaaaattatatttacgttgaa
gctgaaaaggaggcccatgtcaaggaggcttgcaaaggtctacgaaatatttatgcttca
gcaaaaataaccttagttccaataaaagaaatggcagatgtcctctcggttgagagcaaa
tctgttgacctttcaagggattcttgggtccgaatgaagttgggcatatataaaggtgac
cttgctaaggttgttgatgttgacaatgtacgccaaagagtggatgtaaagctgattcct
agaatagatctacaagctttggctagtaaactggaagggagagagactgtaaagaagaag
gcatttgtcccaccaccacgattcttcaatatcgatgaggcgagggagatgcacattcga
gtggaacggaggcgggataaagaatctggagagtattttgagtgggttgataatctgaag
ttcaaagatggtttcttgtacaaatcagtctccacaaaatcaatccacacaaataatatt
cagccatcattcgatgagcttgagaaatttaggaagcctggtgatgacatgaatggcgac
atggctagtttgtccactctgttcgcaaacaggaaaaaaggccacttcatgaagggtgat
gccgtcattgttattaaaggcgatttgaaaaatcttgaggggtgggttgagaaagtagag
gatgaaacagttcacatcagaccaaaaatatctgatcttccgaaaacattagctttcaac
gagaaggagctttgcaaatatttcaaacctggtgaccatgtcaaggtgatctcaggtgtt
caagaaggtgcaactggcatggttgttaaagtggaaggacatgtcttgatcattttgtcc
gacacaactaaagaacatatccgcgtgtttgccgatcatgttgttgaaagctctgaaatt
accacagggattaccagaattggtgattatgaactgcatgatcttgtccttttggacaat
ttgtcatttggggtaattataagggtggaagctgaagcatttcaggttctgaaaggagtg
ccagatagacctgaagttgtactcgtgaaattaagagaaattaaaagcaaaattgatcgt
cgtgcatcagcaaaagataggtcaaataatattatctcagcgaaggatgttgtaagggtt
gttgaaggagcatgcaaggggaagcaaggacctgtggaacacatacacaaggggatactg
tttatctacgacaggcatcaccttgaacatgcaggctttatttgtgcaaaagcacaatct
tgccttcttgttggtggatcaactggtggccatcgaggaaatgtcatggacacagcagat
gctcggcttggtgcattgaggtctccagcaagcattttgcaatctccaggaaggctgccc
ccaagaggacctcacatgaattatggtggaagatttggaggtggtcgtggtggtagaggg
catgatgccttggtgggaaaatgtatcaaaattaagtctggtccttacaaggggtaccgt
ggccgtgtcaaagaggtgactggtgcacttgtccgtgtggagcttgattcattgatgaag
attgtcacagttaaaagagatgatattgctgacactcctactgtcgcaacaccattccgt
gaacctcgttattcattgggtggtgaaacaccaatgcacccgtctcgaacaccacaccat
gcttaccagactccaatacgggaccctggagcaacaccaatacatgacgggatgcgaact
cctatgcgtagtcgagcctgggctcctatgagtcctccgagggataattgggaagatgga
aaccctgctacttggagtagcagtccagcctaccagccaggaactccaccagctcggcca
tacgaagcccccacacctggatcagggtgggcaaacactccaggagttagtttcaatgat
gctccgactcctcgggacaattatgcaaatgctccgagtccatacgtgccttccacacct
gttggtcaaccgatgactccaaattctgccgcgtatcttccgggtacacctggtggtcaa
ccaatgactccaggcaatgttggaatggatataatgtcccccataataggtggtgagggt
gaaggtacatggctgttgccagatgttttggtcaacgtcttgaggggaggtgatgatggt
cctggtgtggtcagggaagtacttggggatggatcttgccgagttgcactcgggtcttcg
ggcaatggtgacgtggtgacggtccttccaaacgaggtcgaggtcatcaggccaaagaag
agtgacaggatcaagatactgaatggcaatttccgtggatacacaggaaaactcataggc
atagatggttctgacggaatagtgaagctggacgacacatacgaagttaagatattagat
atggtgattttggccaaactggcgacttaa
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integrated database retrieval system
