KEGG   Panicum virgatum (switchgrass): 120669596
Entry
120669596         CDS       T07260                                 
Name
(RefSeq) coatomer subunit beta'-1 isoform X1
  KO
K17302  coatomer subunit beta'
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120669596
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120669596
Membrane trafficking [BR:pvir04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    120669596
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   120669596
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 WD40_CDC20-Fz EIF3I Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_SCAP NBCH_WD40 PEP5_VPS11_N Beta-prop_HPS5 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_WDR75_2nd TPR_1 Clathrin WD40_RFWD3 TPR_2 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 HEAT_GCN1 Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 120669596
NCBI-ProteinID: XP_039805321
LinkDB
Position
4N:3358978..3368776
AA seq 910 aa
MPLRLEIKRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQAQAMVKSFEVSELPV
RSAKFVSRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNSKDTNTFSSASLDRTTKIWSLGSPDPNFT
LDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQTKSCVQTLEGHTHNISAVCFHPE
LPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRMVIGYDEGTIMIKMG
REVPVASMDTSGKIIWAKHNEIQTVNIKIVGAGFEVTDGERLPLAVKELGSCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYAIRESTSRIKIFNKSFQ
EKKSIRPTFSAERIFGGILLAMCSSDFICFYDWVDCRLIRRIDVTVKNLYWADSGDLVAI
ASDTSVYILKYNRDVVASYLEGGKPVDEEGVEDAFELLHEVNERVRTGIWVGDCFIYNNS
SWRLNYCVGGEVTTMYHLDRPMYLLGYLANQSRVYLIDKEFNVIGYTLLLSLIEYKTLVM
RGDLERANEILPSIPKAQYNSVAHFLESRGMLEEALEIATDADYKFDLAVQLGKLDVAKA
IAIEAQTESKWKQLGELAMSTGKLEMAEECLHQAKDLSGLLLLYSSLGDAEGIEKLASLS
KGHGKNNVAFLCLFMLGKLEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSK
VNPKAAESLADPSEYPNLFDDWQVALTVEKSVASQRGLYPPAVDYLNHAEKSDSTLVEAF
KRMQVIEDVEPVDPDEENGEPDQEALEENEMENTDEAVPVGADEHEEAVLENGNEGEEQS
SANNEEAASA
NT seq 2733 nt   +upstreamnt  +downstreamnt
atgccgctcaggttggagatcaagcggaagttcgcgcaacggtcagagagggtcaagtcg
gtggatcttcaccccacggagccatggattctgtcaagcctctactcggggagtgtctgc
atctgggattaccaggcacaggctatggtgaaatcatttgaagtttcagaactgccagtg
cggtcggcaaaatttgtatctagaaaacaatgggttgtagctggtgcagatgacatgttc
attcgtgtctacaactacaataccatggacaaagttaaagtttttgaggcccatactgat
tacatcagatgtgttgctgtccatccaactctaccatatgtgctgtcatcatctgatgac
atgttgataaaactgtgggactgggataaagggtggatgtgcactcaaatctttgaggga
cattcacactatgtgatgcaggttactttcaattcaaaggataccaacaccttctcaagt
gcatctcttgaccgcactacaaagatatggagtttgggttctccagatccaaactttaca
ctagatggacatcaaaagggtgttaattgtgttgactacttcactggtggtgacaggccc
tatttgattactggttctgatgactccactgcaaaggtctgggattaccaaacaaagagc
tgtgttcagacacttgaagggcatacacataacatctctgctgtctgtttccatcctgag
cttcctataatcatcactggatcggaagatggcacagttcgtatatggcattcgacaact
tatagactcgagaacacactaaactatggccttgagagagtttgggctgttggatacatg
aagggatcaagaaggatggtgattggttatgatgagggaactattatgattaaaatgggc
cgtgaagtacctgtagcaagtatggacaccagtgggaaaatcatttgggccaaacataat
gaaatacaaactgtaaatattaagattgttggtgcaggctttgaggtcacagatggagaa
agattacccctggctgtaaaagagttaggaagctgcgatctatacccacagagtttgaag
cataaccctaatggccgattcgtcgttgtatgtggagatggcgaatacataatttatact
gcattggcttggaggaatagatcgtttggatctgcattggaatttgtttggtcatcagaa
ggagaatatgcaatcagggaaagtacatcaagaattaaaattttcaataaatcatttcag
gagaagaaaagtatccggcctacattttcagcggagcgtatttttggtgggatattgttg
gcaatgtgttctagtgacttcatttgcttttatgactgggttgattgcagactaatacgc
cgaattgatgtcactgttaagaacctttactgggctgatagcggtgacctagttgcaata
gcaagtgatacgtcagtctacatcctcaagtacaatagagatgttgttgcttcttatcta
gaaggtggaaagcctgtggacgaggaaggtgttgaagatgcttttgagctgcttcatgag
gtcaatgagcgagtgcgtactgggatttgggttggagactgcttcatatataacaattca
tcttggcgcctaaattattgtgttggtggtgaggttaccacaatgtatcacttggatcgc
cctatgtatttgttgggatatcttgcgaaccaaagtcgagtttatctaatcgataaggag
tttaacgtcattgggtacacattacttctcagtttgattgagtacaaaacccttgtgatg
cgtggggatttggaacgcgcaaatgaaattttaccatccataccaaaggcacaatataat
agtgtcgctcatttcttggagtctagaggtatgttggaagaggctcttgagatagccact
gatgctgactataaatttgatctagctgtgcagcttggaaaattagatgttgcaaaggct
atcgccatagaagcacaaactgaatctaaatggaagcagttgggcgaactcgccatgtct
acaggcaagctagagatggcggaagaatgccttcatcaagcaaaggatttaagtggctta
ttgttattatactcgtccctcggagatgctgaaggaatcgaaaagcttgcttctttatca
aaaggacatgggaaaaacaacgttgctttcctctgcctttttatgcttggtaaattggaa
gattgcatacagttgctcatagacagcaatcgtatacctgaagctgcattaatggcgcgt
tcatatcttcctagcaaagtctcagagatagtagcaatttggagaaatgacctcagtaaa
gttaatccaaaagctgcagagtctcttgcagatccttctgaatatccaaatttatttgat
gattggcaggttgcactaactgtagaaaaaagtgttgcttctcagaggggcctctaccct
cctgctgtcgattacttgaaccatgctgagaagtcggattctactcttgtggaggctttc
aaaaggatgcaggtcattgaggacgtggaacctgtagacccagatgaggaaaatggagag
cctgatcaagaggcgttggaagagaatgaaatggagaacacggatgaagctgtcccagtt
ggtgctgatgaacatgaagaagcagttcttgaaaatggaaatgagggtgaggaacagtcc
agtgcgaacaatgaagaagccgcgtcagcctga

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