Panicum virgatum (switchgrass): 120669597
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Entry
120669597 CDS
T07260
Name
(RefSeq) long chain acyl-CoA synthetase 4-like
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00071
Fatty acid degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
pvir04146
Peroxisome
Module
pvir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120669597
00071 Fatty acid degradation
120669597
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120669597
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120669597
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120669597
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
120669597
Lipid biosynthesis proteins [BR:
pvir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
120669597
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of breast milk
120669597
Exosomal proteins of breast cancer cells
120669597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
120669597
NCBI-ProteinID:
XP_039805323
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Position
4N:4281024..4294097
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AA seq
651 aa
AA seq
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MKMKHLVEVEPATETARPAYRNARAKDGLLQPPPGLHSCWDIFRTAVEKYPNNPMLGRWS
VVDGKAGEYTWVTYKEVYDVVLKLAASISKSGTKQGECCGIYGANCPEWIISMEACNALG
VCCVPLYDSLGAGAVEFIICHAEIQVVFVEEEKIAELLKTCHVTSKYLQTIISFGGVTND
HKEEAKNHGLSIFSWEEFLITGGSHQVDLPEKKRSDICTIMYTSGTTGDPKGVMLSNESL
LVNVVGPDSVLQYIGEVFDQDDVYLSYLPLAHVFDRMFEEVFIYHGSKIGFWRGDVKLLV
DDIAALKPTVFCAVPRVLDRIYSGFTAKISAGGILKKTLFNIAYKMKLGSMRKGVKHEKA
APFFDKLVFNKVKEGLGGRLRVILSGGAPLAVPVEEFLRVVTCAYVVQGYGLTETCVGSI
VSIPNEFSMVGTVGPPVQHVDVRLESVPEMGYDALSSIPRGEICIRGSVLFSGYYKRDDL
AQEVMIDGWFHTGDVGEWQPDGSLKVIDRKKNIFKLSQGEYVAVENLENVYGVLQEIDSI
WVYGNSFESYLVAVVNPNQQVLEHWAEQNGITGSFAELCKNSRAKEHILSELTKIAKEKK
LKGFEFIKAIHLDPLPFDIERDLITPTYKKKRPKMLKYYQGEIDALYKGLK
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaagcacctggtggaggtggagccggcgacggagaccgccaggccggcgtac
cggaacgcgcgggccaaggacggcctcctgcagcccccgccggggctccacagctgctgg
gacatcttccggacggccgtggagaagtaccccaacaacccgatgctcggtcgctggagc
gtcgtcgacggcaaggcaggtgagtacacctgggtgacttacaaggaagtctacgatgtc
gtgctgaagcttgcagcctccatcagcaagtcaggaaccaagcagggtgaatgctgcggc
atatacggcgcgaactgcccggaatggatcatcagcatggaggcttgcaatgcgcttggg
gtttgctgcgtgccgctctacgattccctcggtgctggggcagtagagtttatcatatgc
catgccgaaatccaggtcgtatttgtggaggaggagaagatcgcagagctcctgaaaact
tgccatgtcacttcaaagtatctgcaaacaatcataagctttggaggagtcactaatgac
cataaagaggaagctaaaaaccatggcttgtccattttctcctgggaggaattcctgatc
acgggtggctctcatcaagttgatctgcctgaaaagaagagatctgacatctgtaccata
atgtacacaagtggcacaacaggagaccctaaaggagttatgttatcaaatgaaagcctt
cttgtaaacgttgtgggtcctgattctgtccttcagtatattggtgaagtttttgatcaa
gatgatgtttatttgtcatatcttccactagctcatgtctttgatagaatgtttgaggaa
gtgttcatttaccatggatcaaaaattggattttggcgtggggatgtcaaactattggtt
gatgacattgcagcactgaaaccaacagtattctgtgctgttccacgtgtacttgacagg
atatattcaggttttacagccaagatttccgctggtggtatactgaagaaaactttattc
aacattgcttacaagatgaaactgggcagcatgaggaaaggagttaaacatgagaaagca
gctccattctttgataaattagttttcaacaaggtgaaagaagggcttggtggaagatta
agagttattttgtctggtggcgcccctctggctgtacctgtggaagaatttttgagggtt
gtgacgtgtgcttatgttgttcagggctatggactgacggaaacttgtgtgggctctata
gtttcaataccaaatgaattctccatggttgggactgttggtccaccagtccaacatgta
gatgtacgcctcgagtcagttccagagatgggttatgatgctttgtctagcattccacgt
ggagagatatgcataaggggtagtgtgctattctctggatattacaaaagagatgacctt
gcacaggaagtcatgattgacggatggtttcacacaggagatgttggtgagtggcaacca
gatgggtccttgaaagtcattgatagaaagaagaatatattcaagctttctcagggagaa
tatgttgcagtggaaaatctagagaatgtgtatggtgttcttcaggagatagattcgata
tgggtatacgggaatagttttgaatcttatcttgttgccgtggtcaatccgaaccaacaa
gttcttgagcattgggctgaacaaaacggtattactggaagttttgctgaactatgcaaa
aattcaagagctaaagaacatattctctcagaactaacaaagattgcgaaggaaaagaag
ctgaaaggctttgaattcataaaagctatacatctcgacccgttaccgtttgatatcgag
cgcgacctcatcaccccaacatacaagaagaaacggccaaagatgctcaagtactaccag
ggggagattgatgcactctacaagggcttgaagtaa
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