KEGG   Panicum virgatum (switchgrass): 120669616
Entry
120669616         CDS       T07260                                 
Name
(RefSeq) protein decapping 5-like isoform X1
  KO
K18749  protein LSM14
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120669616
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120669616
SSDB
Motif
Pfam: LSM14 FDF SM-ATX
Other DBs
NCBI-GeneID: 120669616
NCBI-ProteinID: XP_039805349
LinkDB
Position
4N:complement(15576518..15582635)
AA seq 660 aa
MAAAAGAPESYIGSVISLTSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGRKKDGQQI
PASDKIYEYILFRGSDIKDLQVKSSPSAQPAALHNDPAIIQSHYPRPVSSSTSLPPAAST
ASTDATSHNAPSAIQMPPPFQGNLPPFQSGANLQSWNSSPMPSSANGAGLTMPPMYWPGY
YTPPTGFPHFQPPPFLRPPPHSLTVPQALQPPVHYPVLNGSLPAGFPSMPELPSFLQPGN
SNSLSPSLGVSTSVSAPASSSTSVTESSGSQLPNKLSSISASVFSVGLTPPSVSPSISTV
EPSMLVSLGMPSLVNSKPVVLPDSTVPSLSSEKPVSVPVAPLPTYLPSSQPPSANDASPV
NVAEQVTLVTPGQLLPTASSTVTPSQALQTASATVPSSKVAFSTVPSSQTTSSAVPSSQA
TSSTASPLKVASSSVLSEEVQVIGENKAVKQREWKAKQPAVAPSGNKEPLLPASKPVLEK
PVGASSYVQYNNRGRGRGRCRGRGNGLSRPITKFTEDFDFMAMNEKFNKDEVWGHLGKST
GQLNDDPNDYEDDVLEDEISPRKPEAKPVYVKDDFFDSLSCNTIDNGGRSGRIKFSEQRK
IDTETFGDSARHRPMGMRGGRAPRGGGGAHGGGPRGRGYYGRGYGYMGRGRGYSYPNHQS
NT seq 1983 nt   +upstreamnt  +downstreamnt
atggcggcggcggcgggtgcgccggagtcgtacatcgggagcgtgatcagcctcacgtcc
aagagcgagatccggtacgagggtgtcctctacaccatcaacaccgaggagtccagcatc
gggctcaggaacgttcgctcatttggaactgaaggtcgtaagaaggatggccaacagatt
cctgccagcgacaagatatatgagtacatactttttcgagggagtgatataaaggatttg
caagtcaaatcctctccatcagctcagccggcagctttacacaatgatcctgcgattatt
cagtcacattatcctcgtccagtctcgtcgtctacaagcttgcctcctgctgcaagcaca
gcatcaactgatgctacttcacacaatgctccatctgcaattcagatgccaccaccattt
caagggaatttaccacctttccaatctggcgccaacttacagtcatggaactcatcacct
atgccatcatcagcaaatggcgctggcctaacaatgccaccaatgtattggccaggatat
tacacaccacctactgggtttcctcattttcagccaccaccctttcttcggccaccacca
cacagtttgacagttccacaggcactacaacctcctgtccactatcctgtgcttaatgga
tccttaccagctgggtttccaagtatgccagagcttccttcttttcttcaacctggtaat
agtaatagtttaagtccatctttaggtgtctcgacatcagtgtcagcacctgcttcatcg
agtacatcagttactgagtcatcaggaagccaactgccaaataagctttcctccatttcc
gcttctgtgttttctgtgggtttaactcccccatctgtgagtccttcaatttctacagtt
gaaccctccatgctcgtgtcgctaggcatgccttctttagtgaacagtaagccagtagtt
ctacccgactccactgtgccatctctctccagtgaaaagcctgtgagtgtacctgttgct
ccattgccaacctatctgccttcctctcagccaccttctgctaatgatgcatcaccagtc
aatgttgcagaacaagttacattggtaactcctggtcaactactgccaactgcttcctcc
acagttactccatctcaggccttgcaaactgcttctgctacagttccatcctctaaggtt
gccttctccacggttccatcctctcagacaacctcctctgcggttccatcctctcaggct
acctcatctacagcttcacccttgaaggttgcttcctcttctgttctgtcagaagaggtg
caagtgataggtgaaaataaagcagttaagcagcgtgagtggaaggcaaaacaacctgcg
gttgctccatccggaaataaggagcctctgttgccagcatcaaagcctgtacttgagaag
cctgttggagcttcctcatatgttcagtacaacaacagaggccgaggaagaggaagatgt
cgtggcagaggaaatgggctttcacgtcccataaccaagttcacagaggacttcgatttc
atggcaatgaatgagaagttcaacaaagatgaagtatggggtcatcttggtaaaagtaca
ggacagttaaatgatgatccaaatgattatgaagatgatgttctagaagatgaaatatct
cctagaaagccagaagctaagcctgtgtatgttaaagatgatttctttgattcactctcg
tgcaacacaattgacaatggagggaggagtggaaggattaaattctctgagcagagaaaa
atagataccgagaccttcggtgactcggcaaggcatcgaccgatgggcatgcgcggaggg
agggccccccgtggtgggggtggtgctcatgggggtggtcctcgaggtcgtggctattat
ggtagaggatatgggtatatgggtagggggcgtggctactcttaccctaaccaccaatca
tga

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