Panicum virgatum (switchgrass): 120669648
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Entry
120669648 CDS
T07260
Name
(RefSeq) AP-1 complex subunit gamma-2-like isoform X1
KO
K12391
AP-1 complex subunit gamma-1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120669648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120669648
Membrane trafficking [BR:
pvir04131
]
Endosome - Golgi transport
Others
AP-1 complex
120669648
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Alpha_adaptinC2
Cnd1
INTS1_R4
Motif
Other DBs
NCBI-GeneID:
120669648
NCBI-ProteinID:
XP_039805388
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Position
4N:5092549..5103183
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AA seq
869 aa
AA seq
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MDLAINPFSSGTRLRDMIRAIRACKTAAEERAVVRREGAAIRAAISEGDQDYRHRNMAKL
MFIHMLGYPTHFGQMECLKLLAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNH
SNQFIVGLALCALGNICSAEMARDLAPEVERLLQNRDPNTKKKAALCSIRIVRKVPDLAE
NFMSAAASLLKEKHHGVLISAVQLCTELCKASTEALEYLRKHCLEGLVRILRDVSNSSYA
PEYDIAGITDPFLHIRVLKLMRILGQGDADCSEYINDILAQVSTKTESNKNAGNAILYEC
VETIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAIAVDTQAVQRHRATILE
CVKDADVSIRKRALELVYLLVNDTNVKPLAKELVDYLEVSDQDFKEDLTAKICSIVEKFS
QDKLWYLDQMFRVLSLAGNYVKDDVWHALIVLMSNASELQGYSVRSLYKALLACGEQESL
VRVSVWCIGEYGEMLVNNISMLDMEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVSL
LKLSSRFPPTSERIKEIVAQNKGNTVLELQQRSIEFSSIIQRHQSIKSSLLERMPVLDEA
NYLVKRAASTQATVSSVKSAPAVTPGGQPKLPNGVAKPPAAPLADLLDLSSDDTPVTTSA
PTTAPNDFLQDLLGISLTDSSPAGGAPSTSTDILMDLLSIGSTPVQNGPPTSNFIPPGIA
ETKSVAVTPQVVDLLDGLSSSTSLPDENAAYPTITAFQSATLRITFSFKKQPGKPQETTI
NATFTNLATTTFTDFIFQAAVPKFIQLRLDPASSSTLPASGNGSVTQGLCVTNNQHGQKP
LAMRIRMSYKVNGEDRLEQGQISNFPAGL
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggacctcgccatcaaccccttctcctccggcacccgcctccgggacatgatacgcgcg
atacgcgcgtgcaagacggccgcggaggagcgcgcggtggtgcggcgggagggcgccgcg
atacgggccgccatcagcgagggcgaccaggactaccggcaccggaacatggccaagctc
atgttcatccacatgctcggctaccccacccacttcggccagatggagtgcctcaagctc
ctcgccgccgcgggcttccccgagaagcgcatcggctacctcgggctcatgctgctgctc
gacgagcggcaggaggtccttatgctcgtcaccaactccctcaagcaagatcttaaccac
tcgaaccagttcattgtggggcttgcactctgcgcccttggcaacatatgttctgctgaa
atggcgcgtgatctggcacctgaagtggagaggctgttgcaaaatagggaccctaatacg
aagaagaaggctgccttatgctctataaggattgtacggaaagttccagacttggcagaa
aatttcatgagtgctgctgcatcattactgaaggaaaaacatcacggagttctgatatcc
gctgttcagctttgcactgaactctgtaaagccagcactgaagcattggagtacttgagg
aagcactgtcttgaaggtttggttcgaatactgagagacgtctccaatagttcatatgct
cctgaatacgatattgctggcattacagatccgttcttacatatccgagtgcttaaactc
atgcggatactgggccaaggagatgcagattgcagtgagtacattaatgatatacttgct
caggtttcaacgaaaaccgagtcaaataagaatgctggaaatgctattttatatgaatgt
gttgagaccataatgggcatcgaagctactagtggtttacgtgtgttggcaatcaatatt
ttgggtagatttttgtccaaccgtgataataacataagatatgttgccctgaacatgctt
atgaaggccattgccgtagacacacaagcagtgcagaggcacagggcaaccattttagag
tgtgtcaaggatgcagatgtctccattcgcaaaagggcactggaacttgtctacctactt
gtcaatgatacaaatgtaaagcctttggctaaggagcttgttgattaccttgaagttagt
gatcaagatttcaaggaagacctcactgccaagatatgctcaatagttgaaaagttttcc
caggacaaactatggtacttagaccagatgttcagagttttatcactggctggaaattac
gtgaaggatgatgtatggcatgctcttatagttctaatgagtaatgcatctgaacttcaa
ggatattcagtcaggtcattatataaagcattgctagcatgtggtgagcaggaaagttta
gttagggtgtctgtttggtgcatcggtgaatatggagaaatgctggtgaacaatattagt
atgttggacatggaggaaccgatcacggtaacagaatctgatgctgtggatgctgtagag
gtttctcttaaacgctactctgcagatgttactactagggctatgtgtctcgtctctctt
ttgaagctttcctcccggtttccaccaacctcagagaggataaaagaaatagttgctcag
aataaagggaatactgtgcttgaattgcagcaaagatctattgaattcagttccatcata
caaagacatcaatctataaaatcatctttacttgaacgcatgcctgtattggatgaagct
aattatttggtgaagagagctgcttctacacaggccacagtttcatcagtaaaatccgct
ccagcagtcactcctggaggccaacctaagcttccaaatggtgtagcaaagccaccagca
gctcctttagctgatttgcttgatttgagttccgatgataccccagtgactacttcggca
cctactacagcgcctaatgattttctacaggaccttttgggcattagcttgactgactca
tcccctgcaggtggagctccatccacaagcacggacattctaatggatcttctatctatt
ggttcaactcctgtacaaaatggcccaccaacatcaaacttcatccctcctggcattgca
gaaaccaaatctgttgctgttacacctcaagttgtggatcttcttgatggtttgtcctcg
agcacgtctcttcctgatgagaatgcagcttacccaacaatcacagcattccagagtgca
accttgaggataacattcagcttcaaaaagcagcctgggaaacctcaggagaccacaatt
aatgctaccttcacaaatttagcaactaccacattcacagatttcatcttccaggcagct
gtgccaaagttcatccagttgcgtttggacccagctagcagcagcactcttcctgccagt
ggaaacggatcagttacgcaaggcctctgtgtcactaacaaccagcatggacagaaacca
cttgcgatgcgtatccggatgtcttacaaagtgaatggcgaggacaggctagaacaaggg
caaatcagcaactttcctgctgggttgtag
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