Panicum virgatum (switchgrass): 120669685
Help
Entry
120669685 CDS
T07260
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120669685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120669685
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120669685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
120669685
NCBI-ProteinID:
XP_039805429
LinkDB
All DBs
Position
4N:40190846..40210007
Genome browser
AA seq
860 aa
AA seq
DB search
MDRDRSSRRARDDDGHHRFRDRDDDRRSRHDTDGHNKHDGGDDDRRRHHREKDGGGDDED
RHSHSHHRNKDDRRSHRHRDGGDDGDGRRRHGRRSMSSSESPPPYAKRDRSSSRPRESIE
RRDSADREPPSSSRKRKGHEGGGCGDEADRDVGKRARASVDPPPPKEERPRRERRRFEDV
DANGKNGDVGSKGSKEISSHDQKMGELAVNGDLQSGAAHSDGSQQPLNAAPAVVSLSVSV
SSKVSSITTNNENEGVSIRSDEVTGKSNTDGSATSAAGKNSNLSLDALAKAKKALQLKKE
LSEKLKKLPMLNKLGTTGTDMQVSKKEDAKTSVETQTVSKGEAKHTGPVSGLPMSSVSGT
PAAAGAIGIPGLTNIPNLEAVKRAQELAAKMGFQQDPHFAPLINMFPGTSTELTVPQRPP
KAPVLRLDAQGREIDEQGKVISMTRPTNLSTLKVNINKQKKEAFQIIKPDLDSLAKSSAH
FDERMGINQNKLLRPKRPGFQFVEEGKLSRQAELNRIKSQFGEAQAKELKVKQAQLAKAK
AEIDMNPNLIEVASGMRAPKQKQKEAIPDIEPWDAKILLSAIYEDFTVEKLNMDRITIYV
EHPEPLDPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVKM
SNLMKVLGSEAVQDPTRLEMEIRTAAAEREQAHVDRNIARKLTPSERREKKERKLFDDPT
NTMETIVCVYKIRNLSHPQTRFKVDVNAQENRLTGAAVITDGISVVVVEGGKKSIKRYNK
LMLNRIDWAAAVSGEDDAEEEPDKPVNSCALVWQGSVAKPAFHRFTVHNCRSEAAAKKVF
ADASVPHYWDLAINFSENSS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgaccgctcctcccgccgcgcccgcgacgacgacggccaccaccgcttccgc
gaccgggatgacgaccgccgcagtcgccacgacaccgacggccacaacaagcacgacggc
ggggacgacgaccgccgccgccaccaccgcgaaaaggacggcggtggcgacgatgaggac
cgccacagccacagccaccaccgcaacaaagacgaccgccgcagccaccgccaccgcgac
ggcggggacgacggcgacggccgccgccgccatggccgccgttccatgtcctcgtcggag
tccccgccgccctacgctaagcgggaccgctcgtcgagccgtccgcgagagtccatcgag
cgtcgcgactctgccgaccgcgagccgccgtcctcgtcacggaagcggaagggccacgag
ggcggtggctgtggggacgaggccgaccgagatgtcggcaagcgggctagggcctctgta
gacccgcctccgcccaaggaggagaggcctaggcgtgagcgccggaggtttgaggatgtt
gatgctaatgggaagaatggtgatgtggggagtaaggggagcaaggagatctcatctcat
gaccagaagatgggggagttagcagttaatggagatttacaaagtggtgccgcgcatagt
gatggttctcagcaaccgctcaatgccgcacctgctgtagtgtcattatctgtttccgtg
tcttcaaaggtatcttcaattactaccaacaatgaaaatgagggggttagtattagatct
gatgaggttactggaaaatctaatacagatggaagtgcaacctcagctgctggcaaaaat
agtaatctatctcttgatgctttagccaaagcaaaaaaagctttgcaactgaagaaggaa
ctgtcagagaaactcaagaaactacccatgcttaataaacttggcactactggtactgat
atgcaagtttctaaaaaagaagatgcaaaaacatctgtcgaaacacagactgtttctaaa
ggagaagcaaagcatactggtccagtttctggcctgcccatgagtagtgtctctgggact
ccagccgcagctggtgcaattggtattccgggtcttacaaacattcctaatctggaggca
gtgaagcgagcacaagagcttgctgctaagatgggattccagcaagatccacactttgct
cctctcatcaacatgtttcccggtacatccactgaacttactgtgcctcaaagacctccc
aaggctcctgtccttcgccttgatgctcagggtagggaaattgatgagcagggaaaagtt
atcagcatgacaaggccaacaaatttgagtactctaaaggtcaatataaacaagcaaaag
aaggaggcttttcaaatcatcaagccagacttggattctctggcaaaatcaagtgctcat
tttgatgaaaggatgggcataaaccaaaacaagctcctccgtcctaaaaggccaggattt
cagtttgttgaagagggaaaactctctaggcaggctgaattgaatagaattaagagtcaa
tttggtgaagcacaagctaaggagctcaaagtaaagcaagcacagctcgcgaaggcaaag
gcagaaatagacatgaacccaaaccttattgaagttgcttctggtatgagagctccaaag
caaaagcagaaggaagcaattcctgacattgagccatgggatgcaaaaattttactttct
gccatatatgaggatttcactgtggagaagcttaatatggacaggatcaccatatatgtg
gaacatccagagccattagacccaccggccgaaccggcaccgccgccgccccagccactg
aagttaactaaaaaagagcagaagaagctgagaacacagaggcgtcttgctaaggaaaaa
gataggcaagaaatgattaggcaaggcctattggagccacccaaaccaaaggtcaaaatg
agcaatcttatgaaagttctaggctctgaagctgtgcaagatcccacacggctggagatg
gaaatcagaactgccgctgcagagcgtgagcaggctcatgtagaccgcaacattgcccgc
aagctcacaccatctgagcgccgcgagaagaaagagcggaagctttttgatgatcctact
aatacaatggagacaatagtttgtgtttacaagatcagaaacctgtcccatccacagaca
cgcttcaaagtcgatgtcaatgcacaagagaataggctaactggtgctgcagtcatcacc
gatggtatcagtgttgtggttgttgaaggagggaagaaatcaatcaaaaggtacaataag
ctcatgctcaaccggatagactgggcagccgcagttagtggtgaggatgatgctgaagag
gaacctgacaagcctgtgaatagttgtgcattggtctggcagggcagcgtggcgaagcct
gccttccacaggtttactgtacacaactgccggagtgaggctgctgctaagaaggttttt
gctgatgcttctgttcctcactactgggaccttgctatcaatttttctgaaaattcatca
tga
DBGET
integrated database retrieval system
