Panicum virgatum (switchgrass): 120669789
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Entry
120669789 CDS
T07260
Name
(RefSeq) lysine--tRNA ligase, chloroplastic/mitochondrial-like isoform X1
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120669789
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120669789
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120669789
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
120669789
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class II (A)
120669789
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
120669789
Prokaryotic type
Other AARSs
120669789
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
tRNA-synt_2d
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
120669789
NCBI-ProteinID:
XP_039805563
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Position
4N:complement(23519461..23550699)
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AA seq
640 aa
AA seq
DB search
MDALRAWRASNLLGFAASRVVTAASAARPLRLRLRCCSSAAATTNQKQQQPPPPPRLPQD
RRRRNASTSTSDRDSIRAIRLKKVEELRGKGYEPYAYKWDRTHTTKKLQEEYTHLENGEI
FEEVAVSIAGRIVARRAFGKLVFMTIRDDTGTIQLYCEKDNLTEDQFEQLKAFIDIGDII
GASGSIKKTEKGELSLYTKNFEILTKSLLPLPDKYHGLTDVDKRYRQRYVDMIANPEVAD
VFRTRAKTRNKVEKKGILFWDQAKLDCCAIGRIAILIQYTQNTPLVQNCQSHKDEISVVS
EIRKTMESFGFIEVETPVLQGAAGGAEARPFITYHNSLQRDLYLRIATELHLKRMLVGGL
ERVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMKMAEEIVVRCTMATHGKLKID
YQGTEISLERPWRRETMHSLVKEATGIDFNIFGQDVESAKSAARGLPGINTGSRGSTSLQ
SCSSVGHVLNEVFETFVESTLVQPTFVLDYPVEISPLAKPHRSYAGLTERFELFICGREI
GNAFSELTDPIDQRRRFENQIKQHNATRAARAKVKFTEDQGDEDDYSYEVCLDEDFLTSL
EYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPVLKIQQ
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggatgctctgcgggcatggagggcctccaatctcctcggcttcgcggcctcccgcgtt
gtcaccgccgcctccgcggctaggccactccgcctccgcctccgttgctgctcttcagct
gccgccacgacgaaccagaagcagcagcagccgccgccgccgccgcggctgcctcaggac
cgtcgtcgccgtaatgcttccacctccacctccgaccgcgactccatccgcgccatccgc
ctcaaaaaggttgaggagctaagaggaaagggttatgagccatatgcgtacaagtgggat
aggactcacacgactaagaagcttcaggaagagtacacccatcttgaaaatggtgaaatc
tttgaggaggtagcggtctccattgccggcaggattgttgcccgaagggcatttggaaag
cttgttttcatgactataagagatgatactgggactattcagctttactgcgagaaagac
aacctgacggaggaccaatttgaacaactgaaggcatttattgatattggtgatatcata
ggtgcaagtggatccataaagaagacagagaaaggggaactatctctttatacgaaaaat
tttgagatcctcacaaaatccttactcccactaccagacaagtatcatgggttaactgat
gtcgacaaacgttatcgtcaaaggtatgttgacatgatcgcaaatcctgaggttgctgat
gtattccgcactagagcaaagacaaggaacaaagtagagaaaaaaggaattctgttttgg
gaccaagcaaaattggattgctgtgccataggaaggatagctatactaattcagtatact
caaaatacacctttggtacaaaattgtcaatctcacaaggatgaaatatcagttgtttct
gaaatccgcaagacaatggaatcatttggtttcattgaagttgaaactccagttctacag
ggagcagcaggtggtgctgaagctagacctttcataacctatcataactcacttcaaaga
gatctttacttgaggattgcaacagagctgcatttgaaaaggatgttggttggagggctt
gagagggtatacgagattggaagaattttccggaatgaaggcatctctactcgtcataat
cctgaatttaccaccattgagatgtatgaagcatattcagactatgaaagcatgatgaaa
atggctgaagaaattgttgttcgatgtactatggctactcatggcaagcttaagattgat
tatcagggaactgaaatttctcttgaaagaccatggaggagggagaccatgcattctctt
gtcaaagaagcaactggaatcgacttcaacatcttcggacaagatgttgaatctgctaaa
agtgctgcaagaggactgccagggatcaacacaggaagcaggggaagtacttcactgcaa
tcctgttcatctgttggacatgttcttaatgaggtttttgagacttttgttgaatctact
cttgtacaaccaacatttgtccttgactacccagttgagatatctccattggcaaaacca
catcggagttatgctggcctcactgaacgatttgaactttttatatgtggtcgtgaaatt
ggcaacgcattttctgagctcacagacccaattgatcagaggagacgttttgaaaatcaa
ataaaacaacacaatgctacacgtgctgcaagggctaaggtcaaatttactgaggatcaa
ggagatgaggatgattattcctatgaagtttgtttagatgaagacttcttaacttcatta
gaatatggaatgccaccagcatcaggaatgggcctgggtatcgaccggttagtaatgctt
ttgacgaactctgccagcataagggatgttattgcctttcctgtcttgaagattcagcaa
tag
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