Panicum virgatum (switchgrass): 120669807
Help
Entry
120669807 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120669807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120669807
03041 Spliceosome [BR:
pvir03041
]
120669807
03009 Ribosome biogenesis [BR:
pvir03009
]
120669807
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120669807
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120669807
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120669807
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120669807
Complex C
U4/U6.U5 tri-SnRNP related factors
120669807
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120669807
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120669807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
120669807
NCBI-ProteinID:
XP_039805579
LinkDB
All DBs
Position
4N:428530..436621
Genome browser
AA seq
999 aa
AA seq
DB search
METLKRKAPDGPAPADNASPLKAPRADAAEPPARTTLAAADPIACVHDVSYPEGYDAAAS
ASRVLAGGAERSEPAKKFPFQLDPFQAEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMS
LRNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYK
GSEIMREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAK
VHKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKGKFREDSFQKALNVLVPASGGDK
KKENGKWQKGIVAGKSSEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLN
EDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQ
EGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQR
GICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRSEDGDPEKLLRFSFYQF
QADRALPDLEKQIKELESDRNSMVIEEEESLKDYYDLLQQYRSLKKDVRDIVLSPKHVLP
FLQPGRLVRILYSTDGSSTFSIDENVTWGIIINFEKVKSSGEDRRPEDSDYTVDVLTRCS
VMKDSSGKKTMKIIPLKERGEPVVISLPLSQIDGLSSIRMYIPKDLLPVEARENTLRKVE
EVLSRFAKDGVPLLDPEEDMKVQSKSFRKATRRIEALEGLFEKHDIRSSPHIQQKLKVLH
AKQELSAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVEVKGKVACEISSA
DELTLTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVA
NLQLECKIQIDVESFVNSFRPDIMEAVYSWAKGSKFYQIMEMTQVFEGSLIRAIRRLEEV
LQQLILASKSIGETELEAKLEEAVSKIKRDIVFAASLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagaccctcaagcgcaaggccccggacggacctgcgcctgccgacaacgcctcccct
ctcaaggcgccgcgcgcagacgccgcggagcctcccgcccgcaccaccctcgccgccgcg
gatcccatcgcctgcgtgcacgacgtctcctacccggaaggctacgacgcggccgcctct
gcctcccgcgtgctcgccggcggtgctgagcgctctgagcccgccaagaagttccccttc
cagctcgacccgttccaggccgaggccatacgctgcctcgacaacggcgaatccgtcatg
gtttcagctcatacatcagctggaaagacagtggtcgccttgtatgcgatagcaatgtct
ctgcgcaaccaacagcgtgtcatctatacgtctccaatcaaggcattgagcaaccaaaaa
tacagagagttcaaagaagagttctctgatgttggtctcatgactggggatgtcacaatt
gagccgaatgcctcctgcctggtcatgaccacggaaatttggcggagcatgcagtacaaa
ggatctgagatcatgagggaagttgcttgggttatatttgatgaggtgcattacatgcgg
gatagagagagaggagtggtgtgggaggagagtatagtgatggctcccaagaactcacgt
ttcgtgttcctctcagctactgtaccaaatgcaaaggagtttgctgattgggtagctaag
gtacataaacaaccttgccatatagtatacaccgactaccgacccacacctctccagcac
tatgtatttccttcaggaggggatggattatatctggtagtggatgagaagggcaagttc
agagaggacagtttccagaaagcattgaatgtgcttgtccctgctagtggcggtgacaag
aagaaggaaaatgggaagtggcagaaaggtatcgtggcaggcaaatctagtgaggaaagt
gacatattcaagatggttaaaatgataattcagcgtcaatatgatcctgtgatacttttc
agctttagcaaaagggaatgcgaatttcttgctatgcagatggctaagatggacttgaac
gaggatgatgagaaggcaaacattgaaactattttttggagtgctatggatttgctatct
gatgatgacaaaaagcttcctcaggtttcaaacatgctgcccttactgaaacgcggtatt
ggcgtgcatcattctggtctgttgcccatcttgaaggaagtgattgagattctcttccag
gagggcctcatcaagtgtttgtttgccacagaaacattcagtattgggctgaacatgcct
gcaaagactgttgtgtttaccaatgtgcgaaaatttgatggagaccgattcagatggttg
tcgagtggtgagtacatccagatgagtggccgtgctggtcgtcgaggtattgatcagcgt
ggtatatgtatcctgatggtagacgagaaaatggagccttcaactgccaaaatgatgctg
aaaggaagtgctgatagtttgaacagtgcctttcatctgagctacaatatgctgttaaat
caaatgagatctgaggatggagatccagaaaagcttcttcggttttcattttaccaattc
caggctgatcgagctctccctgatcttgagaagcaaatcaaggaactggagtcggatagg
aattccatggttattgaggaagaggagagcttgaaggattactatgatctcttacaacag
tacagaagtttgaagaaggatgtccgtgatattgtcctatctccaaaacatgttctgcct
ttcttgcaacctggaaggcttgtccgtattctatatagtacagatgggtcgtccaccttc
tccattgatgaaaatgtcacatggggaattattataaactttgaaaaagtgaaatccagt
ggtgaagataggaggcctgaagattctgattatacagttgatgtccttaccagatgttct
gtaatgaaggatagcagcggaaagaaaacaatgaagattattcctctgaaagaacgtgga
gaaccagttgttatttcacttccactttcacagattgatggactaagtagcatccggatg
tacatacctaaggatcttctgcctgtagaagctcgagaaaacactttgaggaaagttgaa
gaagtgctttcaaggtttgctaaagatggggtacctctattggatccagaagaggatatg
aaggtacaatcaaaatcttttcggaaagccaccagaagaatcgaagctctggagggctta
ttcgagaagcatgatatccgtagttctccacatatccagcaaaaacttaaagtcttgcat
gctaagcaagaattatcagctaaaataaagtccatcaagaaaacaatgcggtcttccact
gctttagctttcaaggatgagctcaaggcccggaaacgggttcttcgcaggctgggatat
gttacaagcgatgatgttgtggaagtgaagggcaaggtggcctgtgagataagctcagct
gatgagctgacattgacagagcttatgtttagtggcactttgaaggatgctactgtagaa
cagatggtagccctgctttcttgctttgtttggcaggagaagctccaggatgccccgaag
ccaagggaggagcttgatttgctcttctaccaattgcaggagacagcaagaagggttgct
aaccttcagctagagtgcaagatccaaattgatgtggaaagctttgtgaattctttccga
cctgacataatggaagcggtgtattcttgggccaaagggtcgaaattctaccaaatcatg
gagatgactcaagtgtttgaaggcagcttgatcagggccatcaggaggctggaggaggtt
ctgcagcagctaattctggcatccaagtcgattggggaaaccgaattggaagcaaaactt
gaggaggcagtcagcaagatcaagagggatatagtattcgctgcatctttgtacttgtaa
DBGET
integrated database retrieval system
