Panicum virgatum (switchgrass): 120669857
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Entry
120669857 CDS
T07260
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120669857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120669857
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19-related factors
120669857
Complex C
120669857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_12
zf-CCCH_2
zf-CCCH
RRM_occluded
RRM_YTH1
zf-CCCH_3
RRM_3
zf-CCCH_4
zf-CCCH_PARP12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
120669857
NCBI-ProteinID:
XP_039805661
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Position
4N:complement(5349735..5355083)
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AA seq
496 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSYGKARPNDTILKLQRTAPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLSKAGEMPSLTPPDDETIRTLYIGGLDSRVT
EQDLRDQFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPKPEEDESGRQGQVSHGGLLPRAVISQQQGSDQPQPPGMEGQHQPPAPASYYFNIPA
PPAAERTLYPSMDPQRMGAIVKSQDGEGNPGPQQAGQAQPSSSSGQGGHPAPPPYYHGQY
PPYYPPPPYGSYMHPPRMPYPPQYPPYQPMLAPPAQAHASSSQQPVQAGQQPPQGPPAQS
QQPAPGPSVQQQPSQN
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcacaccggctgctgcgggacgcgcaggcggatgggtgggagcggtcggacttcccc
atcatctgcgagtcatgcctcggcgacaacccctacgtccggatgttaagagcagaatat
gacaaagagtgcaaaatatgtgcacgtccttttactgtcttccgatggagacctggtcgg
gatgcaaggtacaagaaaacagagatctgccagacatgttgcaagctgaaaaatgtctgc
caggtttgcctgctggatcttgaatatggtctaccagttcaggtccgggatacagcgctc
gccatcaattcgaacgatgcaattccaaggagtgatgtcaatcgtgaatattttgcagaa
gagcatgatcgaagggccagagctggcatagactatgattcttcctatgggaaggcccgt
ccaaatgataccattctgaagcttcagaggacagcaccatattacaagaggaacagggct
cacgtttgcagtttctatgtacgtggtgaatgtactagaggtgctgagtgcccatatcga
catgagatgcctgaaaccggggagctatctcaacagaacatcaaagatcgttactatgga
gttaatgatccagttgcaatgaaacttttgagtaaagcaggtgagatgccatccctgaca
ccaccagatgatgagactataaggacactatacattggtggactcgatagcagagtaact
gaacaggatttgagggaccagttttatgcccatggtgagatcgagtccgtaaggatggtg
cttcagcgtgcatgtgcatttgtgacatacactacaagagaaggcgctgagaaggctgca
gaggagcttgctaacaaactagtcatcaagggtgtgcgactgaagctcatgtggggcaag
cctcaggctccaaagcccgaagaggatgaatcgggaaggcaggggcaggtttcccacgga
ggacttctccctagggctgtcatatctcagcagcaaggcagtgaccagcctcagcctcct
ggtatggagggccagcatcaaccaccagcaccagcatcatactacttcaacattccagct
ccaccagcagcagagcggactctgtacccgtccatggatcctcagaggatgggtgctata
gttaagtcacaggatggagaaggcaacccagggccgcagcaagctggacaagctcagcca
tcaagcagctcaggacagggcggccatcctgcgccaccaccatactaccatggtcagtat
ccaccatactatccacctccaccatatggtagctacatgcatccacctcgcatgccctac
ccaccccagtatccaccataccagccgatgctagcaccaccagcacaagctcacgcaagt
tcatctcagcaaccagtgcaagcaggacagcagccacctcaaggccctcccgctcagtca
cagcagccggcgcccggcccttcagtgcagcagcagccatcccagaactga
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