Panicum virgatum (switchgrass): 120669887
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Entry
120669887 CDS
T07260
Name
(RefSeq) cell division control protein 48 homolog C-like
KO
K14571
ribosome biogenesis ATPase
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120669887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120669887
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120669887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
AAA_14
Rad17
AAA_22
AAA_33
AAA_16
AAA_2
TIP49
AAA_17
AAA_28
RNA_helicase
nSTAND3
NPHP3_N
IstB_IS21
Vps4_C
ABC_tran
AAA_18
Mg_chelatase
Viral_helicase1
Cytidylate_kin2
NACHT
NB-ARC
TsaE
Bac_DnaA
AAA_3
NTPase_1
SKI
AAA_11
Parvo_NS1
Nucleolin_bd
Mu-like_Pro
Motif
Other DBs
NCBI-GeneID:
120669887
NCBI-ProteinID:
XP_039805706
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All DBs
Position
4N:complement(4656128..4661226)
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AA seq
772 aa
AA seq
DB search
MAKRPRHGGAGRSRLPPLEGKLRRYILNGGLAVPGASAEEVADTLRIHHPEFRRQKLDPF
TALVRRVLSSIPSPSSSSSGSDDDDDDGSSASRRRHDAHATTSSSTSVFDEAAHPPPSPA
FDVTKSLLRSQYAARAQTPKRNPAANQQQLEIEENAEKARRLITSDGGAGGDAKPDAAAS
EGIVRGGKGPRFADLGGMEAVIEDLMMEVVVPLCHPELPQRLGVRPVAGLLLHGPPGCGK
TTLAHAIANETGLPFYKISAPEVVSGVSGASEENIRGLFQKAYRTAPSIVFIDEIDAIAS
KRENLQREMERRIVTQLMTCMDQFHQNIGSGSSDLDAESAEKKPGYVIVIGATNRPDAVD
QALRRPGRFDREISLGVPDENARKQILKMLTQNLRLEGEFDLFKIARATPGFVGADLKAL
VDKAGNLAMKRIIDERRAQYCRNHDGNSKHDWWRQPWDASEVEGLHITMDDFEEATKMVQ
PSLRREGFSSVPDVTWNDVGGLDSLRKEFDRCIIRRIKHPEDYEVFGVNMQAGFLLFGPP
GCGKTLIAKAVAHEAGANFIHIKGPELLNKYVGESESEVRKIFSRARTNSPCILFFDEVD
ALTTKRGKEGGWVVERLLNQLLIELDGADQRQGVYVIGATNRIDVIDDAVLRPGRFGKKH
YVPLPGAEERVSILRAHARSKPISSNVDLIALAHRAECNNLTGADLASLVNEAAMAALEE
RLEFLENGTSSMSSSSLIELSHFERALSKVKPSVSEQQIKHYEALSKRYSSN
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcgcccgcgtcacggcggcgctggccgctccagattgccgcccttagagggg
aagctccgccgctacatattgaacggcggcctagctgtccccggcgcctccgccgaggag
gtcgccgacaccctccgcatccaccacccggagttccgccgccagaagctcgaccctttc
accgccttggtccgccgcgtcctctcctcgataccctccccctcatcctcctcctccggc
tccgacgacgacgacgacgacggctcctccgcatcccgtcgccgccacgacgcccacgcc
acgacatcctcctccacctccgtcttcgacgaggccgcacacccgccgccgtcccccgcc
ttcgacgtcaccaagtccttgctccgctcccagtacgccgcgcgcgcgcaaacgcccaag
cggaaccccgccgctaaccagcagcagctggagattgaggagaatgcagagaaggcgcgc
cgcctcatcacgtccgacgggggcgccggcggagatgctaagccggacgccgcggcctct
gaaggaatcgtcagaggggggaaggggccgagattcgccgatctcggtgggatggaggcg
gtgatagaggacctgatgatggaagtggtcgtgcccctgtgccatccggagctgccgcag
cgccttggggttaggcctgtcgctgggctgctgctacatggaccgcctggttgcggaaag
accacccttgcgcatgccattgctaatgagactggtttgccattctacaagatctcagcc
ccggaggtcgtatctggggtatctggagcttctgaggaaaacatcaggggcttgtttcag
aaggcctataggactgctccctcaattgtattcattgatgaaatagatgcaattgcatcc
aagagggagaatctgcaacgagagatggagcgacggatagttactcaattaatgacatgc
atggatcaattccaccagaatattggatccggcagcagtgatttggatgcagaatcagct
gaaaagaaacctggttatgttattgtcattggagccacaaataggcctgatgctgtggat
caagctctgcggcggccaggaaggtttgatcgagagatatctcttggtgttccagatgag
aatgcacggaaacagatacttaagatgcttactcagaatctccgacttgaaggtgaattt
gacttgttcaagatagctagagccacaccaggttttgttggtgctgacttgaaggcctta
gtggacaaagcaggcaatctagcaatgaagagaataattgatgaaagaagagctcagtac
tgtcgtaatcatgatgggaatagcaagcatgactggtggagacaaccttgggatgccagt
gaggtggagggcctacatattacaatggacgactttgaggaagcaacaaaaatggttcaa
ccatccttgagaagagaagggttttcatctgtccctgatgtcacatggaatgatgttgga
ggtcttgattcattaaggaaagagtttgaccgctgcattattcgacgtatcaagcatcct
gaagattatgaggtgtttggagtgaatatgcaagctggcttcctgttgtttggacctcca
ggctgtgggaaaacattaattgcaaaagcagtggcccatgaggcaggggctaattttatt
catatcaaggggcctgagctattgaacaagtatgttggggaaagtgaatcagaagtgagg
aaaatattcagtcgtgcacgcacaaattccccatgcatcctattttttgatgaggtagat
gctttgacaacaaagagagggaaagagggaggatgggttgttgaacgtctcctaaatcag
ttacttattgaacttgatggtgctgatcaacggcaaggtgtctatgtgataggagctaca
aacagaattgatgtgatagatgatgctgttctacggcctggtagatttgggaagaaacat
tatgtacctttacctggtgcggaagagcgggtctcaatattaagagcacatgctcgaagc
aagcccatctcatctaatgttgatttgattgcactggcacatcgtgcggaatgcaacaat
ctcactggagccgacctagcatcactggtcaatgaagcagcgatggcagcattggaagag
agattggaattccttgagaacgggacatcatcaatgagttcctcttctttgatcgagctc
tcacacttcgaacgtgctctatcaaaagttaagccatcagtatctgaacagcaaattaaa
cattacgaggcattgtcaaagagatactcgtcaaactga
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