Panicum virgatum (switchgrass): 120669888
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Entry
120669888 CDS
T07260
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120669888
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
120669888
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MID_MedPIWI
Med13_N
Med13_C
Motif
Other DBs
NCBI-GeneID:
120669888
NCBI-ProteinID:
XP_039805707
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Position
4N:complement(4098739..4114720)
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AA seq
1915 aa
AA seq
DB search
MWTNIFKIAELQTVSWFQFLPIEPDASTTKERSSKAEQKDALNNIVLSAYLNLQSEGFLS
TWTNSFVGPWDPSQGEHNPDEKIKLWLFLPGRHSAVSEMAQTAVNKLRVASNGLWVAPGN
SEEVATALSQALRNSLERSLRGLSYARFGDVFTKYNPPTRNQNSFRQAQPTVEFVFAATE
EAIFVHVVISARYMRNLCSDDIEKVLTHSPRSVGEGLPVVVAPSGMLGRLVGCCPSDLVR
QVYPSKSSAASLPGFTQPTVCQLRGQSYYVEVALGFPAASADKVSESEHIQIKKEMDSAK
DSQLGVDGQRKVESPDSLPVLERTFIYPPEAVLVPMVHQAFVRFSSKRMCLQGLLGGSLW
EAWPFWNFSPSSYFQNSSFLGSSRGLGVNSNFLRLRRKKNKCNGTASSISSVSSTSDGSE
RAVTTEGDLLADADSMACRQSDMPSNNDNAGSKMVSKRSHSEIMEVSSHAGKDVSENVQG
TNGQVGRPWGWDDEGVVMDINILLSEFGDFSDFFQEEELDFGEPPGTAESQALVIPASNC
GDVTFTDSPSTAMDIPEQRLSPVGFTSLDAFDHQIMAPAQDAVSKVQEPQKDIATPAQSQ
SLVLSSGRFDYLTKAEAMLTFAPEYAAVEVSVAEMPASLFTNPYLPRSKKPGSSSFSSRV
YSYDVTQSSQIEPAGDKPEKPSKLTSGNPLRDVDSSNLYTLVEGRKKESEKSLNSTDIQP
SKGETSPPISGVTSFSSSLVSQKKSDSMFNAGYFLLSMKTALATEIECITFQAALCRIRH
TLLSLRSKASAEFSSTMSSFMQTDVSNKSDLTPKYDIRKKEMMPIRLSSDVEHETHDRSL
MESVGVWRPVVTPKGSNSLEPLSAKTLTGASPSLSMQRQPVVDLLFAMALLVQQSTSFVD
ISLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLCAE
VSESSMFSLLQSDIRTALKSAFGNMDGPLSVIDWCRGRSNPAESAASGDAYSFQYSTGDI
RESSSTTSIGGDSMSPPQPTSSNRGTSELEHQKGYHRVRPTIAVLPSPSVLVGYQDDWLK
ASVNGLKTWEKAPFEPYASPKPVTYYALCPDIDMLTSAATDFFLQLGTVYEVCKLGTHSP
QNSGGQMELSPGKYLPSGLVLVECPDQLKKVGNNYLSPISSISDYLLAFSKHWSVKSFVT
SVSRILRDIKLTSSISTNQKESSSGPCTVIYVVCPFPDPCAILQTLVESSVALGYVISSP
ERERKSLYFQVAKAQNSSASADEASASNVVMLSGFSIPKLVLQIVTIETLLRIDKSSNEL
AVLKDIAFTVYNKARRIPRAVSTNDMFQSPTYLGRSQSMMMHVTSPAPTLWKECLVPRMS
GPTLPRETDFDAPMRSATWDNSWQPARAGGLLDPSKIPDLFAQDDRKYAFEPLFILADPG
SVDPNASMESSKSGADAGGSGVYGSISGSTSDSGVSPLLDGSESDRAASLHCCYGWTEDW
RWLVCIWTDARGELLDSLIFPFGGISSRQDTKVLQSLFIQILQQGCQIMSSSPEASNMRP
RDVIITRTGGFLELEIQEWQKAIYSFGGNEVKKWPVQLRRSIPEGISSNSNGPTLQQQDM
TLIQDRNMPSSPNPLYSPHSKASYMKGGLGQSGNKKQILVEQTGMDSSRGSLHLVRSISL
VAVSQDHSLHLTCQADLLTRPASGEGNQGGSGTSSYLEGFTPVKSIGSMPASHSYLLVPS
PSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTAIPLAMGYIISKAIPPIRRDSAQVTRE
DRPSVLSVSIIDHYGGSIGTVQEKMSRGSGGSNMSKQARNFTQETSTRDYEMEMHNVLET
VAAELYSLSWLTVSPVYTERRTALPFHCDMVLRLRRLLHYADRHLTQPAEKGERA
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atgtggaccaacattttcaaaatagcggagctccaaacagtttcatggtttcagtttctt
cctatcgaaccggatgcaagtacaactaaagagagaagttcaaaggctgagcagaaagat
gctcttaataacattgtgctttcggcatatcttaacttacaaagtgaaggcttcctaagt
acctggacgaattcctttgttggtccatgggatccatctcaaggagagcataaccctgac
gagaagatcaagctctggttgtttcttcctggccgccactcagcggtatctgaaatggcc
caaactgctgtaaacaaactaagagttgcgtcaaatggtttatgggtagccccaggcaac
tcagaagaggtagcaactgcactgtctcaggccttaagaaattctttagaaagatcacta
agaggtctttcctatgcaagatttggcgatgtttttacaaaatacaacccccctacaaga
aatcagaacagctttaggcaagcgcagcctacagtagagtttgtctttgctgccactgag
gaagcaatatttgtgcacgtggtaatatctgctcggtacatgcggaacctttgtagtgat
gacatagagaaagttctcactcattctcctcgctctgttggtgaaggtcttccagttgtt
gttgctcctagtggaatgctgggcaggcttgtcggctgttgtccaagtgatcttgtgaga
caagtatatccaagcaaatcctcggcagctagtttgccaggttttacccaacctactgta
tgtcagctgagaggccaaagttattatgttgaagttgcacttggctttcctgctgcttca
gctgacaaagtttctgaatcagaacatattcagattaaaaaagaaatggattcagcgaag
gactctcagttgggtgttgatggacagcgaaaggtagaatcacctgatagccttccagtt
cttgagaggacattcatttacccacctgaggctgttttggtacctatggtccatcaagca
ttcgttcgtttttctagcaaaagaatgtgtttacagggcctgctgggaggttcattatgg
gaggcatggccattctggaatttttctccatcttcttactttcagaacagctctttcctc
ggatcttctcgtggacttggagtgaattctaattttctgagactaagaagaaaaaagaac
aagtgcaacggcacggctagtagtattagtagtgtgagtagcacttctgatggaagtgaa
cgtgcagttactactgaaggcgatcttttagctgatgctgactctatggcatgccgtcag
tctgatatgccttccaacaacgataatgccggtagcaagatggtatccaagcgttcccat
tctgaaataatggaggtttcttctcatgctggcaaagatgtcagtgaaaatgtacaaggc
acaaatggtcaagttgggcgcccttggggctgggatgatgagggtgttgtgatggacatc
aatatacttctctcagagtttggagattttagcgacttctttcaagaagaggagttagat
tttggtgagcctccaggtactgctgaatcacaagctctagtgattcctgcttccaactgt
ggagatgtcacattcacagatagtccatccacagcaatggatatccctgaacaaagactt
tctcctgttggtttcacatctttggatgcgtttgaccaccaaattatggcccctgctcag
gatgctgtttctaaagttcaagaacctcagaaagatattgcaacacctgcacagtcccag
tcgttagttttatcatctggaagatttgattatcttaccaaggctgaagcaatgctcaca
tttgctccagaatatgcagctgttgaagtttctgttgctgagatgccagcatctttgttt
acaaatccgtacttgcccagatcaaagaaaccaggcagttctagttttagttcaagagtt
tattcatatgatgtcacacagagttctcaaatcgagcctgcaggagacaagcctgagaag
ccttctaaactaacatctggtaatcctttacgtgatgttgattcatcaaacttatacaca
cttgtcgaaggtaggaagaaagagagtgagaagagcttaaacagtaccgacatacagcca
agtaagggagaaacatcaccacctatttctggtgtgacttcatttagttcttctcttgtt
tcacaaaagaagagtgacagcatgtttaatgccgggtattttctgctatctatgaagact
gctcttgcaactgaaattgaatgcatcaccttccaggctgccttgtgcagaattaggcat
accctattgtctttgagaagcaaggcgtctgctgagtttagcagcacaatgtctagtttt
atgcagacagatgtcagcaataaatcagacctcacccccaagtatgacataagaaagaaa
gaaatgatgcccataaggttgtccagtgatgttgagcatgaaactcatgacagatccttg
atggaaagtgtgggagtttggaggccggttgttactcctaaagggtcaaactcccttgag
cctttgtctgctaaaacattaactggtgcaagcccaagtctgtctatgcaaaggcagcct
gttgtggatcttctctttgccatggcattacttgttcaacaatctacttcatttgttgat
atttcacttgatatggatgatggggatggttcctttttctggctttccctggatgagcaa
aagagacgtgggttttcttgtgatccttcaatggttcatgctggctgtggtggtctatta
ggaacatgccattcgaaggattgtgctggtgttgatttagttgatccactttgtgctgag
gtttcagagtcatccatgtttagcttgttgcagtcagatataaggacagctctcaaatct
gcctttggaaacatggatggcccattatcagtgattgattggtgcagaggtcgaagcaat
ccagctgagtcagcagcttcgggagatgcctactcttttcagtactccactggtgatatc
cgggagtcatcaagcactacgtccattggtggagattcaatgagcccacctcagccaacc
agtagcaaccgaggcacttcagagctggagcaccagaagggatatcaccgtgtcagacca
accattgctgtcctcccttcaccttctgtgcttgtcggttaccaggatgattggttgaaa
gcctcggtgaatggtcttaagacttgggagaaagctccttttgagccttatgcctcgccc
aagcctgttacttactatgcactttgccccgatattgatatgcttacttcagcagccact
gattttttcttgcagcttggaacagtttatgaagtttgcaaactgggaactcattcacca
caaaacagtggaggacaaatggaactgtctccgggaaaatatttgccttcaggacttgtt
ctagttgagtgtcctgatcagttgaagaaggttggcaacaactacttaagtcccatcagt
tcgataagtgactatcttctagctttttcgaaacattggagtgtgaaaagctttgtgaca
tctgtgtcgaggatactcagggatataaaactcacttcaagcatctctacaaatcaaaaa
gagagcagtagtggaccttgcactgtaatttatgtggtctgcccatttccagatccctgc
gcaattctacagacactagtagaatcttctgttgctcttggatatgttatttcatccccg
gagagggaaaggaagtcactgtatttccaggttgccaaagcacaaaacagcagtgcttct
gcagatgaagcatcggcatcaaatgttgtaatgctatctgggttcagtatacctaagctc
gtgttgcagattgttactattgaaacgttactgagaattgataagtcaagcaatgagctt
gctgttttgaaggacatagcattcacagtgtataacaaggcccggcgaatcccacgagct
gtttccacaaacgacatgtttcagtcacctacttatttgggtagatctcagtctatgatg
atgcatgttacatcgcctgctcctacactttggaaagaatgcttagttcctcggatgtct
ggaccaactctccctcgagagacagattttgatgcacccatgaggtcagcaacatgggat
aactcatggcagcctgctcgtgctggaggactgctggacccaagtaagatcccagattta
tttgctcaagatgataggaagtatgcttttgagccacttttcatactagcagaccctggg
tctgttgatcctaatgcttcaatggaatcgtcaaaatctggagcagatgctggtggcagc
ggggtttatggatcaatctcaggaagcacctctgatagtggtgtgagccctctactcgat
ggatctgagagtgacagagcagcaagtctccattgctgctatggttggactgaggactgg
cgatggttagtatgcatctggacagatgctagaggagagttattggatagcctaatattt
ccttttggtggtattagtagccgccaagacactaaagttctccaaagtcttttcattcaa
attctgcagcaaggttgtcaaataatgtcgtcttcacctgaggctagcaatatgcgacca
agagatgtcataataactcgtactggaggttttcttgaactggaaattcaagaatggcaa
aaggcaatatattcttttggtggtaatgaggtcaagaagtggcctgtgcagttacggcga
tccatacctgagggtatttcatctaattctaatggtcctacactccagcagcaagacatg
acattgattcaagatagaaacatgccttcctcaccaaatcctttgtatagtcctcattca
aaagcaagttacatgaaaggtggacttggacaatcaggcaacaaaaagcagatcctagtg
gaacaaactgggatggacagttcaaggggttcactgcacttagttcggagcatcagtttg
gttgcagtttcccaagatcattcattgcatctcacatgtcaagcagatctgttgacccgg
cctgcttctggtgaaggcaatcaaggtggcagtggtacttcaagttacttggaaggtttc
actccagttaagtccattgggtcaatgccagcatcacattcatatctcctagttccttct
ccaagtatgagatacctttctccggcaacattacagctcccgacatgcctgacatcagaa
tctccaccgcttgcccatctattgcacagcaaagggactgcaattcctttggcaatgggc
tacatcatctccaaagccatcccacccataagaagggactctgcacaggttaccagggag
gatcggccctctgttctctcggttagcatcattgatcactatgggggcagcattggcaca
gttcaagaaaagatgagtcgaggctctggtggcagcaacatgagcaagcaggcaagaaac
ttcactcaggagacatcgactagagactatgagatggagatgcataatgtgctggaaact
gtagccgccgagctttactccctttcctggttgacagtaagcccggtctacacggaaagg
cgcactgctctgcccttccactgtgacatggtcctaaggttgaggcggcttctgcactat
gctgatcggcatctaactcaaccagcagagaagggagagagggcttag
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