Panicum virgatum (switchgrass): 120669905
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Entry
120669905 CDS
T07260
Name
(RefSeq) LIMR family protein Os06g0128200-like
KO
K14617
LMBR1 domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04977
Vitamin digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
120669905
04980 Cobalamin transport and metabolism
120669905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120669905
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
120669905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LMBR1
DUF2981
Motif
Other DBs
NCBI-GeneID:
120669905
NCBI-ProteinID:
XP_039805737
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All DBs
Position
4N:complement(1653560..1659111)
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AA seq
510 aa
AA seq
DB search
MGDFNLALVIVAVVVSVIVLLVSVYLLVNYQHPDDANQAYFPKLVVVLGLTVAVLSILML
PADVANRQACRKAVYNGACNLTLPMKTLWLVVYIVDAVLVFLVIPFAMFYYEGDQDKSVG
KRLRTALIWVVASAVVCGLVLGILYGLVGKVDFTVRHLSSSVETFPNSFSGLSSGQPCIS
SLPRQCAASTAPSSSLTTWTMRATFPEYVVALTTIVGSVLFTIFGGVGIACLPLGLIFSF
VRRPKAVITRSQYIKEATELGKKARELKKAAEALHQEERSGNKGRKWRKNVKAVEKELLL
LEDDMKALEEMYPQGEQAETTWAFTVLGYIAKLIFGVVGLIISIAWVAHIVIYLLIDPPL
SSFLNEVFIKLDDVWGLLGTAAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMKWGGTLM
NSFLFNVGLILLCSISVIQFCATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYG
FVALAILTLFYYAIFGWRKRKPTGRFQLSN
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgggggacttcaacctggcgctggtgatcgtggcggtggtggtcagcgtgatcgtgctg
ctcgtcagcgtctacctgctcgtcaactaccagcaccccgacgacgccaaccaggcctac
ttccccaagctcgtcgtcgtgctcggcctcaccgtcgccgtcctctccatcctcatgctc
cccgccgacgtcgccaaccggcaggcctgccggaaggccgtctacaacggcgcctgcaac
ctcacgctccccatgaagacgctctggctcgtcgtctacatcgtcgacgccgtcctcgtc
ttcctcgtcatacccttcgccatgttctactacgagggcgaccaggacaagtccgtgggg
aagaggctcaggaccgcgctcatatgggtcgtcgcgtccgcggtggtttgcggcctcgtc
ctcggcatcctgtacggacttgttggtaaagtagacttcactgtcaggcacctgtcttca
tcggtcgagacatttccaaactcattttctggattgtcaagcggtcagccttgcatcagt
tcattgcctcgtcagtgtgcggcttctacggcaccgtcaagctctttaacaacttggaca
atgcgtgctaccttccctgaatatgtcgttgctcttactactatcgttggatctgtgctt
ttcaccatatttggtggtgttggcattgcttgccttccattaggacttatattctcattt
gtccggcgtccaaaagctgttattacacgctcgcaatatataaaggaagcaactgaattg
ggaaagaaggccagggagttgaagaaagcagctgaagcccttcaccaagaagagagaagc
gggaacaagggcaggaaatggcgcaaaaatgtgaaggctgtggaaaaggagttattactt
ctggaagatgacatgaaggctctggaggagatgtatcctcaaggagaacaggctgagact
acttgggcattcacagtcctcgggtacattgcaaaacttatatttggtgttgtcgggtta
atcatatcgatagcttgggttgcacatatcgtcatatacttgctgattgatcctcctcta
tcatcattcctgaatgaagtcttcataaagttggacgatgtttggggtctgcttgggact
gctgccttcgcgttcttctgcttctatctccttattgcagtgatcgctggggagatgatg
cttggcttgaaactagttttcatcaccattcatccgatgaaatggggaggcactttaatg
aactccttcctgtttaatgttggactcattctactttgctctatcagtgtgattcagttc
tgtgccacagcttttgcatactatgcacaagcaactgctgctcaggagatcttcggccac
acattgcaatctcttcgtggaattaagtacctttacaagtacaacgttttccagtatggc
tttgttgctcttgccatactcacgctcttctactatgcgatatttggatggcgaaagagg
aaaccaacaggaaggttccagctctcaaattga
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