Panicum virgatum (switchgrass): 120669974
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Entry
120669974 CDS
T07260
Name
(RefSeq) soluble starch synthase 2-3, chloroplastic/amyloplastic-like
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120669974
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pvir01003
]
120669974
Enzymes [BR:
pvir01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
120669974
Glycosyltransferases [BR:
pvir01003
]
Polysaccharide
Storage polysaccharide
120669974
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_transf_5
Glyco_trans_1_4
Glycos_transf_1
GT4-conflict
Glyco_transf_4
Motif
Other DBs
NCBI-GeneID:
120669974
NCBI-ProteinID:
XP_039805845
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All DBs
Position
4N:complement(11651291..11656877)
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AA seq
758 aa
AA seq
DB search
MSSAAASSAFILALSSGTPGWRSRGGASLNFPLWAPPRRAARDDAMVARAAEAGTGGRDA
APPERSAGAGADASIRQPRARRKAVSRRRDPVQPAGRYGSGPGNAAASQNGALAGGEIDS
IVAAPPASIVKFAGPGYTVILPTQDVAPTRGVVPAPEPPLPPSEENFVSRPASVPKPRTD
GNAGLAEKRRAMVDVERVPNPIPPPPPAPKPEPAVQEQEGAWDFKKYIGFDEPDETKDEA
GVGADAAGSFADYENDDPSPLAGENVMNVIVVSAECSPWCKTGGLGDVAGALPKALARRG
HRVMVVVPRYGDYAEAFDMGITKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQGD
IYGGNRQEIMKRMILFCKVAVEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYR
DNGIMQYTRSVLVIHNIAHQGRGPVAEYPYMDLPEHYLQHFELYDPVGGEHANIFAAGLK
MADQVVTVSRGYLWELKTVEGGWGLHDIIRSHDWKMNGIVNGIDHQEWSPEVDVHLRSDG
YTNYSLRTLDAGKRQCKAALQRELGLEVRDDVPLLGFIGRLDGQKGVDIIGDAMPWLAGQ
DVQLVMLGAGRADLERMLQQLERAHHDKVRGWVGFSVPMAHRITAGADVLLMPSRFEPCG
LNQLYAMAYGTVPVVHAVGGLRDTVAPFDPFGGAGLGWTFDRAEPNKLIEALGHCLDTYR
KYRESWRGIQARGMSQDLSWDHAAELYEEVLVKAKYQW
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggcggccgcctcttccgccttcatcctcgcgctctcctccggcacccccggg
tggcgcagccgcggcggcgcgagcctcaacttcccgctctgggcgccgccgcggcgcgcg
gcgcgggacgacgcgatggtggcgcgcgcggcggaggccgggacggggggcagggacgcg
gcgccgccggagcggagtgccggcgccggcgccgacgccagcatcaggcagccccgcgcg
cggcgcaaggcggtctccagacggagggatcctgttcagccggccggccgttacggctcc
gggccggggaacgcggcggccagccagaacggcgcgctggcgggcggcgagatcgactcc
atcgtcgccgcgccgccggccagcattgtgaagttcgcgggcccgggctacaccgtgatc
cttcccacccaggacgtagcgccgacgaggggtgtcgtcccggccccggagccgccgttg
ccaccgtctgaggaaaacttcgtgtcgcgaccagcttccgttcccaagccccgcaccgac
ggcaatgccggacttgcagagaagaggcgtgcaatggttgacgttgaaagagttccaaat
ccaattccgcctcctccgcctgcgcctaagcctgagcctgcggtgcaagaacaagagggt
gcttgggatttcaagaaatatatcggtttcgacgagcctgatgaaacgaaggatgaggcc
ggggttggtgcagatgctgctggttcttttgcagattacgagaacgatgatcctagccct
ttggctggggagaatgtcatgaacgtgatcgtggtgtctgctgaatgttctccctggtgc
aaaacaggtggccttggagatgttgcgggagctctgccgaaggctttggcgagaagagga
catcgtgttatggttgtggtaccaaggtatggggactatgcggaagccttcgacatggga
atcacgaaatactacaaagctgcaggacaggacttggaagtgaaatatttccatgcattt
attgatggagtcgattttgtgtttatcgacgcacctctcttccggcaccgtcaaggtgac
atatatgggggaaatagacaggaaattatgaagcgcatgattttgttctgcaaggttgct
gttgaggttccttggcatgttccatgtggcggtgtgtgctatggtgatggcaatttggtg
ttcattgctaacgactggcacactgcactcctgcctgtttatctgaaagcatattacaga
gacaatggcataatgcagtacactcgctccgttctcgtcatacataacatcgctcaccag
ggtcgcggccctgtagctgaatacccgtacatggacctgcctgagcactacctccagcac
ttcgagctgtacgaccccgtcggcggcgagcacgccaacatcttcgctgcgggcctgaag
atggcggaccaggtggtcaccgtcagccgcggctacctgtgggagctgaagacggtggaa
ggcgggtggggcctccacgacatcatccggtcccacgactggaagatgaacggcatcgtg
aacggcatcgaccaccaggagtggagccccgaggtggacgtgcacctccggtcggacggg
tacaccaactacagcctccggacgctggacgccggcaagcggcagtgcaaggcggcgctg
cagcgggagctggggctggaggtgcgcgacgacgtgccgctgctcgggttcatcgggcgg
ctggacgggcagaagggcgtggacatcatcggcgacgcgatgccgtggctggcggggcag
gacgtgcagctggtgatgctgggcgccgggcgcgcggacctggagcggatgctccagcag
ctggagcgggcgcaccacgacaaggtgcgcgggtgggtggggttctcggtgcccatggcg
caccgcatcacggcgggcgccgacgtgctgctgatgccgtcccggttcgagccgtgcggg
ctgaaccagctgtacgcgatggcgtacggcaccgtccccgtggtgcacgccgtgggcggg
ctgagggacacggtggcgcccttcgacccgttcggcggcgccgggctcgggtggacgttc
gaccgcgccgagcccaacaagctgatcgaagcgctcgggcactgcctcgacacctaccgg
aagtacagggagagctggaggggcatccaggcgcgcggcatgtcgcaggacctcagctgg
gaccacgccgccgagctctacgaggaggtcctcgtcaaggccaagtaccagtggtga
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