Panicum virgatum (switchgrass): 120670003
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Entry
120670003 CDS
T07260
Name
(RefSeq) RNA-binding KH domain-containing protein RCF3-like
KO
K21444
poly(rC)-binding protein 3/4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120670003
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
120670003
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Gene cluster
GFIT
Motif
Pfam:
KH_1
Motif
Other DBs
NCBI-GeneID:
120670003
NCBI-ProteinID:
XP_039805886
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Position
4N:26860928..26874460
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AA seq
664 aa
AA seq
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MDRSRSKRGYHYDQDSPPPRSKQRFDRRSGGGGQNPNSGYHRRGPPGGGGSSDRRGFLPP
DAAPPPPPPPPPPPSAAAGAPGAASTITSFRILCPECKAYGLSPGFVAKVRDDSGALVTV
HPPFAGDYVRVIETVDGARREADGRPPMYSPAQEALLMVHRRILETEAEDGDEDGEYGPR
GKDPRDRGKTTTRLIVPKLHVGCLLGKGGKIIEQMRMETKTHIRILPRDQHTPRCVSLSE
EVVQVVGDGNCVRKAVAIITDRLKESLHRDRGPFRGRMNSPEPRISQEDEYLGGVQQMPL
YEETYGRPDQIRNNIGMEPPGYEFDSNGGKVIEHPNILYDAIVFRILCPNDKASSLVSTR
DGIIEMLQADVGVDVRLTDIIAGSDERVVIITSREGPDHELFPAQEALLHIQTHIVDLGP
DKDNIITTRLLVPSSEIACFDGREGSLSDIQRQTSANVQILPREDLPSCALDSDELIQIV
GDIRAARNALMHITTKLRSYLYREMSGPIQVGNINVHGAISPATGSPRGPYQGNDIPMGP
YHQAPQLTASWHSKDSGGSASGSFEQGSNINDDIRQNASKRFAVPLVTRSTLEVVIPNSA
VASLTMRAGSKLAQISEMSGATVTLADDRPGILEKVVQISGTPEQTEKAKSLLQGFILSI
QDDS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggatcgttcccgctccaagcgcggctaccactacgaccaggactcgccgccgccccgc
tccaagcagcgcttcgaccgccgcagcggtggcggcggccagaacccaaactctggttac
caccgccgcgggccacccggaggcggcggctcctccgaccgccgcggcttccttccccct
gatgccgcgccgcccccgcccccgcccccgcctcccccaccgtcggccgctgcgggggcg
ccgggcgccgcgtccaccatcacctccttccgcatcctgtgccccgaatgcaaggcctac
ggcttatcgcccggcttcgtcgccaaggtccgcgacgacagcggcgcgctcgtcaccgtg
cacccgcccttcgctggcgactacgtccgggtcatcgagacggtcgacggcgcgcggcgc
gaggctgacggccgcccccccatgtactctccggcgcaggaggcgctcctcatggtgcac
cgccggattctcgagacggaagccgaggatggcgacgaggatggcgagtacgggcccagg
gggaaggacccgcgggacagggggaagaccaccacgcgcctcatcgtgcccaaacttcac
gttggatgcctgctcggcaagggcggtaagatcatcgagcagatgaggatggagaccaag
acgcacatcaggattctgccgcgcgaccagcatacgccgcgctgtgtgtccttgtccgag
gaggttgtacaggttgttggagatggaaactgtgttaggaaggctgtagcaataatcact
gatcgcctaaaggaaagcttacaccgcgatcgtggtcctttccgagggcgaatgaattca
ccagagcctcgaatttctcaggaagatgaatacctgggtggtgttcagcagatgccttta
tatgaagaaacttacggacgacctgatcagattaggaacaatattggcatggagccacca
gggtatgagtttgattcaaatggtggcaaggtcattgaacacccaaatattctgtatgat
gctatcgtatttcgaattctttgcccaaatgacaaggctagcagtttagtttcgacgcgt
gatggaataatagagatgctacaggcagatgttggtgttgatgttaggcttactgatatt
attgctggttctgatgaaagggttgtaatcatcacatcaagagagggcccagaccatgag
cttttcccagcccaggaagcactgctgcacatccaaactcatattgtagaccttggccct
gataaggataacattatcacgacaagactacttgtaccttcaagtgaaattgcttgcttt
gatggaagggaggggtcattatctgatatacagagacagactagtgcaaacgtgcagata
ttaccaagagaagatcttccatcatgcgccctagattctgatgaactcatacagattgtt
ggagatattagagctgctcggaatgctcttatgcatataactacaaaactaaggagttat
ctataccgtgagatgtctggtcctattcaagttggtaacattaatgtacatggagccatt
tctccagcaactggctcacctcgaggaccataccagggaaatgatattccaatgggtcct
taccaccaagcaccacaactgacagcttcatggcactcaaaggatagtggaggcagtgca
agtggatcatttgagcaaggtagcaacattaatgatgatatcaggcaaaatgcttcaaaa
agatttgctgttcctctagtgactagaagcacgttagaagttgtcataccaaacagtgct
gttgcaagcctcaccatgagggctggtagcaagcttgcccaaataagcgagatgtctggt
gctactgtaactctcgctgatgatagacctggcatcttggagaaagttgtacaaatatct
ggtacccctgagcagactgaaaaagctaaaagtttgctgcagggatttattcttagcatc
caagatgacagttga
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