Panicum virgatum (switchgrass): 120670038
Help
Entry
120670038 CDS
T07260
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
KO
K28361
transcription factor SPT/ALC
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120670038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120670038
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120670038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
CENPU
Ribosomal_S20p
DUF5010
Motif
Other DBs
NCBI-GeneID:
120670038
NCBI-ProteinID:
XP_039805947
LinkDB
All DBs
Position
4N:4929327..4932751
Genome browser
AA seq
314 aa
AA seq
DB search
MDEQGFGGFGGGRGAVRGQGREAMALLQHQHHHQRRRQLEVEEEEEEEARRQMFAGVAAF
PAAALGLGHEADYGEEAGGLGDSDAGGSEPEPARQRGGSGSKRSRAAEVHNLSEKRRRSK
INEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGVYLNPPYLSGALEP
AQASQMFAALGGGNITASSTGAVMPPVNQSSGTHQAFDPLNPPQNQPLSFLLPSVPDKTI
PERQFHLEPSQSHLQTFRMPESSEMMLRGEIMAKHQLTSAQERVGLPGNDMKPIRQESSI
VHADHFDGCSRSKE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcaggggttcggcggcttcggcgggggccgcggggcggtgcggggccagggg
cgggaggcgatggcgctcctgcagcatcagcaccaccaccagcggcggcggcagctggag
gtcgaggaggaggaggaggaggaggcgcggcgccagatgttcgccggggtggcggcgttc
ccggcggcggcgctggggctgggccacgaggcggactacggagaggaggcgggcgggctc
ggggacagcgacgcgggcgggtcggagcccgagccggcgcggcagcgcggggggtccggc
agcaagcggagccgcgccgccgaggtgcacaacctctccgagaagaggaggaggagcaag
atcaacgagaagatgaaggcgctgcagagcctgataccgaactccaacaagactgacaag
gcgtccatgcttgacgaggccattgagtacctgaagcagctgcagctccaagtgcagatg
ctgtctatgagaaatggtgtttacttgaacccaccatatttatctggtgcacttgaacct
gcgcaagcatcacagatgtttgctgcacttggtgggggcaacatcacagcgtcaagcact
ggggcagtgatgccacctgtaaaccaaagttcaggaactcatcaggcatttgacccatta
aatcctccacaaaatcagccattatcttttctcttaccaagtgttcctgacaaaacaatt
ccagaacgtcaatttcacttggaaccatcacagtcccaccttcaaacatttcggatgcct
gaatcttctgagatgatgcttcggggggagataatggcaaagcatcagctaacttcagct
caagaaagagttggtctgcctggaaatgatatgaagcccatcaggcaagaatcatcgatt
gtacacgctgatcattttgatggttgctcacgtagcaaagagtga
DBGET
integrated database retrieval system
