Panicum virgatum (switchgrass): 120670089
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Entry
120670089 CDS
T07260
Name
(RefSeq) heparanase-like protein 3
KO
K07964
heparanase [EC:
3.2.1.166
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00531
Glycosaminoglycan degradation
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
120670089
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pvir00536
]
120670089
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.166 heparanase
120670089
Glycosaminoglycan binding proteins [BR:
pvir00536
]
Heparan sulfate / Heparin
Enzymes
120670089
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_79n
Motif
Other DBs
NCBI-GeneID:
120670089
NCBI-ProteinID:
XP_039806014
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All DBs
Position
4N:complement(5788878..5792778)
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AA seq
568 aa
AA seq
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MAAAGLRLLGAVWLLAALLLLRPGAAASAAVAAVDGRRAIAATGEDFVCATLDWWPPDKC
DYGTCAWGRAGLLNLDLSNKVLLNAVRAFSPLKLRLGGSLQDKVLYGTADLRQPCTPFVK
NESEMFGFTQGCLPLRRWDELNAFFQKSGAKIVFGLNAMKGRVPLPDGSMGGPWDYTNAA
SLIQYTAYKGYHIHGWELGNELSGKGVGARIGADQYAADVIALKTIVDDIHRSTPSKPLV
LAPGGFFDPDWFTELIVKTKPNLLNVMTHHIYNLGPGRDTNLIEKILNPSVLDGMVSIFS
NLQGILKSTGTSTVAWVGEAGGAYNSGHHLVTDAFVFSFWFLDQLGMSAKYDTKSYCRQS
LIGGNYGLLNTTTFQPNPDYYSALLWHRLMGTKVLATTFNGTNKIRAYAHCAKDSPGITL
LLINLSGNTKTEVTVTAHAAAAGGAHKHGERTSYTTAQVSVTNQAATAGEHKHGARRHAR
KFGHAHAHAPGFAAAADGATRDEYHLTPKGGDLRSQVMLLNGKALATGADGSIPRLEAVK
VDAAQPIAVAPYSIVFARISDFHAPACS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggggttgcggcttcttggagccgtgtggctcttggcggcgctgctgctt
ctgcggccgggcgccgcggcgtcggccgcggtggccgccgtggacggccggcgcgccatc
gcggcgacgggggaggacttcgtgtgcgcgacactggactggtggccgccggacaagtgc
gactacggcacctgcgcctggggccgcgccgggctgctcaacctggatctctccaacaag
gtcttgctcaatgccgtcagagccttctcgccgctgaagctccggctgggaggctcgctg
caggacaaggtgctgtacggcaccgccgacctccggcagccgtgcacgccgttcgtcaag
aacgagtcggagatgttcggcttcactcagggatgcctgcccctgcgcaggtgggacgag
ctcaacgcattcttccagaaatccggtgccaagattgtgttcgggctgaacgcaatgaaa
ggccgggtcccgttgccggatggatctatgggagggccatgggattacaccaatgcagca
tcgctgattcagtatactgcatacaagggctaccacattcatggatgggagcttggaaat
gaacttagtggtaagggagttggagcccgaatcggagctgaccaatatgccgcagatgtg
atcgccctgaaaacaatagtcgacgacatacaccgaagcactccatcaaagccactggtg
cttgctcctggaggattttttgacccagactggttcacggaactgatcgtcaaaaccaag
ccaaatctgttgaatgtgatgacccaccacatctacaacttaggaccaggaagggataca
aatctgattgaaaagatcctcaatccgtcggtcctcgacggaatggtaagcatattcagc
aatcttcagggcatactgaaatccacagggacatcgaccgtcgcatgggttggggaagct
ggaggggcttacaacagcggccaccaccttgtcactgacgcatttgtgttcagcttctgg
tttttggatcagcttgggatgtcagcaaagtatgacacaaagagctactgcagacagagt
ttgattggcggcaactacggcctgctgaacaccacgacatttcaaccgaaccctgactat
tacagtgctttactgtggcatcgcctcatgggaaccaaagttctagcaacaacattcaat
ggcaccaacaagatccgcgcttacgcccactgcgctaaagattcgccaggaatcactcta
ctgctgatcaacctcagcggcaacaccaagactgaagtcaccgtgacagctcatgccgcc
gctgccggcggtgcgcacaagcacggcgagaggacgagctacaccacggcccaggtctca
gtgacaaaccaagccgccaccgccggtgagcacaagcacggcgcgaggaggcacgccagg
aagttcgggcacgctcacgcccacgcccccggctttgcggcggcggccgacggcgccacg
agagacgagtaccacctcacgccgaagggcggcgacctgcggagccaagtgatgctgctg
aacggcaaggccctggccaccggcgcggacgggagcatccctaggctggaggcggtgaag
gtggacgcggcgcagcccatcgccgtggcgccctactccatcgtgttcgctcggatttca
gatttccatgccccggcatgtagctag
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