Panicum virgatum (switchgrass): 120670097
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Entry
120670097 CDS
T07260
Name
(RefSeq) amino acid transporter AVT1C-like
KO
K15015
solute carrier family 32 (vesicular inhibitory amino acid transporter)
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
120670097
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120670097
Transporters [BR:
pvir02000
]
Solute carrier family (SLC)
SLC32: Vesicular inhibitory amino acid transporter
120670097
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Motif
Pfam:
Aa_trans
Trp_Tyr_perm
Motif
Other DBs
NCBI-GeneID:
120670097
NCBI-ProteinID:
XP_039806023
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Position
4N:complement(27981095..27990646)
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AA seq
568 aa
AA seq
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MRSPISERSLIIESSDDEDTHSAAAAATIEKRHVHDEEEQGAGSDSDSSSSSSCATPRRG
PCSPSSPYAQQWPQSYRQSIDILSSVQSPNLSFLGTPTLSRLSNSFLAVTDSFRSKTPEI
VSNFIKPLLSPTTSDEQQQHEDTQKSSQYLLPSRKLSLQQIPEDQKQLVAGHEVSPYRNC
SYTQGVMNGINVLCGVGILSTPYAIKQGGWIGLGILSLFALLAWYTGMLLRHCLDSKEGL
ETYPDIGHAAFGSTGRIVISIILYVELYACCIEYLILESDNLSKLFPTAHLTIGSLTLNS
HVFFAILTTIIVMPTTWLRDLSCLSYISAGGVIASILVVICLSWVGVVDDVGFENKGTML
NLPGIPIALGLYGYCYSGHGVFPNIYSSLKNRNQFPSILFTCIGLSTVLYAGAAVMGYKM
FGEATESQFTLNLPDNSVVSKVAVWTTVANPITKYALTIIPLAMSLEELLPSSQQKYWSI
IMLRSALVVSTLLIALSVPFFGLVMALVGSLFAMLVTYILPCACYLAILKTKVGWHQIAA
CSFIIIVGVCCACLGTYSSLSKIIQNYT
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaggagcccgatttcggaacgcagcctcatcatcgagagctccgacgatgaggacacc
cactcagccgccgccgcggccaccatcgagaaaagacacgtccatgatgaggaggagcag
ggcgctggctcggactccgactcctcgtcgtcctcgtcctgcgccaccccacgccgcggc
ccctgttcccccagctccccctacgcccagcaatggccgcagagctacaggcaatcaatt
gacattcttagtagcgtgcagtcacccaatctcagttttttaggcactccaactctgagc
agattgtccaactctttccttgctgtcaccgattcctttcggagcaaaacccctgaaata
gtctctaactttatcaagccacttctgagccccactacaagcgatgagcagcagcaacac
gaagatacccaaaagagttcccagtaccttctgccctcaagaaagctatctttgcaacaa
atccccgaggatcagaaacaattggtagctggtcatgaagtgtctccttatcgaaactgc
tcttacacacagggagtgatgaatggaataaatgttctatgtggcgtgggaatcctatca
acaccttatgccattaaacaagggggttggattggacttgggatactcagtttattcgct
ttgcttgcatggtacactggcatgctcctgcgccattgcctggacagcaaggaaggcctt
gagacatacccagatattggccatgccgcctttggcagcaccggtcgcatagttatatcg
ataatcctgtatgtggaattgtatgcctgttgcatcgagtatttgatattggagagcgac
aatttgtcaaaattgttccccactgcacatctgaccattgggagcttgacactgaactct
catgtattttttgcaatcttgactaccatcatagtaatgccaaccacctggctccgtgac
ctgagctgtctgagctatatttcagctggaggtgtcattgcatcgatccttgtggtcatc
tgcctgtcctgggtgggggttgttgatgatgttggctttgagaacaaagggactatgctg
aacctcccaggaattcctattgcacttggattgtatggttactgctattcagggcatggg
gtgtttccaaacatctattcgtctctgaagaatcgcaatcagttcccttcaattcttttt
acttgcattgggctgtctactgttttatatgctggtgctgctgtgatgggatacaaaatg
tttggagaagccacagagtctcagttcacgcttaacttaccagacaactcagtggtttca
aaggttgctgtttggacaacggtggcaaatccaataacaaaatatgcattaaccataatc
ccactggccatgagtttggaagagctgctgccatcaagtcaacagaagtactggagcatt
atcatgcttagatcagccttggtggtgtcaaccctgctgattgctttatctgtgccattc
tttggacttgtgatggccttggtgggttccttattcgccatgcttgtgacctatattttg
ccttgcgcgtgttatttggcaatccttaagacaaaagtggggtggcatcagatagcagct
tgttcgttcatcatcattgtcggggtttgctgcgcttgcttggggacatactcatccctg
tccaagataatccagaactacacataa
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