Panicum virgatum (switchgrass): 120670170
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Entry
120670170 CDS
T07260
Name
(RefSeq) protein transport protein SEC16B homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120670170
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
120670170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
120670170
NCBI-ProteinID:
XP_039806171
LinkDB
All DBs
Position
4N:complement(462663..471377)
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AA seq
1918 aa
AA seq
DB search
MAADFDDTTEDFFDNLVNSDDDGDDDRPRLAAAAAEASAGDLAALTLDDQSDAGPPDNQP
APAPLAEEPEHHPTPPNPDPLTEPVAEAEPAVAPPGAAAQQPAVAPPGAAADEPSLAPNK
GAHATPALKQVQWNDFGASTGAAGADPFGDLPPGGVENSFFGGTAAGNQGGQESLLGASN
ASAPDHSFSAGADNNATAADGQTDYSFYGRTDNNNTNSQLNSTTGAAVYGDQTTNFQLES
ADPRYLESLYPGWKYDDATQQWYQVDTLSAQHITAETTSAAAVLGSDNVQQQQQNNSHAE
AANGSTEITPQPKLVPEADDQPMPAPHKEDVDHEPIPAHPQLEPMGGHASLLGTTNASAP
DHSFYGGMDSNDSSQFDSITAAAGYGRYSTDAQLESADPRYLESLYPGWKYNDATQQWYQ
VDTGSAQHIAAEATSAVAVVGSDNVQQQQQQNNSHAEAGHELTEATSEPKPEFVPSAAPS
ETEADNEPLVAPHKDEVGNDPTLVCPQVEPVVAHHPEADNEAVEVGSAVLHPDTKTELQK
MPASADKAVTAPDGGSMGLEKGIHTAIKQVQWNDFGANTSAGGADPFGDLLPEGTEDDFF
GATVPGNQGVQASMVGTSNVTTLDHSFSAGVDNNATISAGVVGYSFSGGMDNDANSSASA
AGYGVQSTDAQLDSTDPKYLESLYPGWKYDVVTQQWYQVDTPGAQSYAADNTGAVAVLES
DNVQQHQQQFSASYLQNTSHAVLETIAEESSGNAASWGQSRSSAAPVEYPPNMLFYAEYP
GWYFDTNTQQWQSLESYQQSVAQAATSPAASDGFAGAGYSVAQYTDDSYASSFSKQSQWQ
PDSLGNTMQPDVLGGNSLLGCSYSSNQQAENQIGRQANSESLQSSINYKPHADTFVPSTG
QHTGSEGNHATYEGFRGNHSSYKGSEHSTSQEVGYKGFASSTGFQTGHKELQPPIDHQAG
HMAHEPSTRVGYGNSNGPKDFVPKESMYKTQTHAVSSAHTYVPDNYWGTQTAMDFAQQQQ
IGTNGPTQQFGFSPHEQRSSAGRPPHAVVTFGFGGKLLVLRESSSMTANFDSGNQGNSGR
TVSVLNIPEIVADKIDNQSMANGSALSYFHALCRQPIPGPLVGGSAASKDVNKWLDDMIG
VYESSLTAFQGGDVQKVLISLLKILCQHYGKLRAPFGSDPSQEGIDGPDMAVTKLFSSCK
SSANMKGYGVHCMRNLPSESQIQATAQEVQNLLVSGRRKEALQYAQEGQLWGPALILALQ
LGDKFYADTVKKMAHCHFVSGSPLRTLCLLIAGQPADVFSSENPINSGSLYTPHQPVEVA
PKGMLDDWQENLAIITANRTKGDDLVITHLGDCLWKEKNEVASAHSCYLVAELNIDSYSE
SARMCLIGADHLRCPRTFASPEAIQRTEVYEYAKVLGNSQYILLPFQPYKLIYAYMLAEI
GKVSDSLRYCQASLKVLKASGRTPELEAWKQLFSTLEERIRTYQQGGYATNLAPGMIVGK
LFTSLDKSLSRMMGTQSAPMPPLPPGGANERDVYSPPDTKVANNQSVMSMSPLMSSASEQ
SMSEMAGNCGPGREVAHNRSISEPDFGKTPQKQAAGSSKTQSTSGSGSSRFGWLVQKTVG
LVSKSHRQAKLGEQNKFYYDEKLKRWVEEGAEVPAEEPPLPPPPTKSSFQNSIPESKLNG
PPVVGGYTANGFAEAKALNPSEPSSGMPPMPPTQNQFSARGRMGVRSRYVDTFNKGGGGG
ANAFGAATMYSKPAAPSMSSLSGAKFFVPTPAAAAAAASEQAAADATMDAHSETTQQAEP
SSSPAVEAAAFSSLAPPVPMQSTIQRYPSGDNIQRYPSMDNIVPPADSAGSSMSRSRASS
WSGAYPEHLSGTAVSRSPEGQTMPPPMMPGKRPPHSRSSSNSSLQFNGLGEDLHEVEL
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacttcgacgacaccaccgaggacttcttcgacaacctagtcaattccgac
gacgacggcgacgacgatcgccctcgcctagccgcggccgccgccgaggcctccgcgggg
gacctcgccgcactcaccctggacgaccaatccgacgcgggcccacccgataatcaaccc
gcgccggcgccactggcggaggagccggagcatcaccccacgccgccgaatcccgaccct
cttacggagccggtggcggaggcggaacctgccgtcgcaccacctggcgccgcggctcag
cagcctgccgtcgcaccgcctggggctgcggccgacgagccttccttggccccgaacaag
ggcgcccatgccacccccgccctcaagcaggtgcagtggaacgattttggtgccagcacc
ggggccgccggggcagatccgttcggagacctcccgccaggtggagtggaaaactctttc
ttcgggggtactgctgccgggaatcagggcggccaggaatcacttctaggtgccagcaat
gccagtgcaccagatcacagcttctccgctggagcggataacaatgccaccgccgctgat
gggcagacagattacagcttctatgggcgaacggacaataacaatacaaattctcagttg
aactccaccactggtgctgcggtatatggcgatcaaaccaccaactttcaattggaatcc
gctgaccccagatatcttgagagcctctaccctgggtggaagtatgatgacgccacacag
cagtggtatcaggtagacactctcagcgcacaacatattactgctgaaacaaccagtgct
gcagcagtccttgggagtgataatgttcagcagcagcagcaaaacaattcacatgcagag
gccgcgaatggatccacagagataactcctcaacccaagcttgtgcctgaggctgatgat
cagcctatgccggcgccacataaggaggatgtggaccatgagcccataccggcgcatcca
caactggagcctatgggtggccatgcatcacttctaggtaccaccaatgccagtgcacca
gatcacagcttctatggtgggatggatagcaatgacagttcccagttcgattcaatcaca
gctgctgcaggatatgggcgttacagcaccgatgcgcaattggaatccgctgaccccaga
tacctagagagcctctatcctggatggaagtacaacgatgccacacagcagtggtatcag
gtagacactggcagcgcacagcatattgctgctgaagctactagtgctgtggcagttgtt
gggagtgataatgttcagcagcagcaacagcaaaacaattcgcatgcagaggctggacat
gaactcacggaagcgacttctgagccgaagcctgagtttgtgccctcggcagcgccttct
gagactgaggctgataatgaacctttggtggcgccacataaggatgaggtggggaatgat
cccacactggtgtgtccacaggtggagcctgtggtggcgcatcatcctgaggctgataat
gaggcagttgaggtggggtctgcggtgctgcatcctgataccaagactgaactccagaaa
atgcccgccagtgctgacaaggctgtcacagcgccagatggtgggtccatggggttggag
aagggcatccacaccgccatcaagcaggtgcagtggaacgactttggtgccaacaccagt
gctggcggagcagatccgtttggggaccttctgccagaaggaacagaggatgacttcttt
ggggctactgtgcctggcaatcagggtgtccaagcatccatggtaggtaccagcaatgtt
acaacactagatcacagcttctctgcaggagtggataacaatgccaccattagtgctgga
gtggtgggttacagcttctcagggggaatggataacgatgccaattccagtgcaagtgct
gcgggatatggcgttcagagcaccgatgcacaattggactccactgatcccaaatatctc
gagagcctctaccctggatggaagtacgatgtggttacgcaacagtggtatcaggttgat
actcccggtgcacagagttatgctgctgataatactggtgctgtggcagtccttgagagt
gataatgttcagcagcatcagcagcaatttagtgcttcgtacctgcaaaacacctcgcat
gcagtacttgagaccattgcagaggagagcagtggcaatgccgcgagctggggccagtct
aggagcagtgctgcgcctgtagaatacccaccaaacatgttattctatgcagaataccca
gggtggtactttgatacaaacactcagcagtggcaatcactcgagtcataccaacaaagt
gttgcgcaagctgcaacttctccagcagcctcagatgggttcgcaggggctggttatagt
gtagctcagtacaccgacgattcttatgcaagtagcttcagcaagcagagccagtggcaa
ccggattcattgggtaacactatgcaacctgatgttttgggaggtaatagcttgttgggt
tgttcctatagttccaatcagcaggctgagaatcagattgggcggcaggccaattctgag
tcattgcagtcatctataaattataagcctcatgcggacacatttgtgccttctacaggc
caacacactggtagtgagggcaatcatgctacttatgagggattcagagggaaccacagt
tcgtacaagggttctgagcattctacaagtcaggaggttgggtacaaagggtttgcatct
tcaacaggtttccagactggtcacaaggaattacagcctcctattgatcaccaggctggc
cacatggcacatgaaccttcaacaagggttgggtatggtaattcaaatggtccaaaagac
tttgttccaaaagagagcatgtacaagacacaaacacatgctgtctcctctgcacatacg
tatgtgcccgacaactattggggtactcagaccgcaatggactttgctcagcagcaacag
attggtacaaatggtccaacccaacagtttggtttctcaccacatgagcagagatcatca
gctggacgcccaccacatgctgtggtcacctttggatttggggggaagctattagttttg
agagagagcagctccatgaccgcaaactttgacagcggaaatcagggcaattctggtcgc
acagtgtcagttcttaatattccagaaattgtcgctgataaaattgacaatcaaagcatg
gctaacggcagtgcacttagctacttccatgctctttgtcgtcaacctattcctggccct
cttgttggtggtagtgctgcatcaaaggacgtgaataaatggcttgatgatatgattgga
gtatatgaatcttctcttacggcattccagggaggggatgtccagaaggtgcttatttcg
ttgttgaaaatactgtgtcaacactatggaaaactccgtgcaccctttgggtctgatcca
tcacaggagggtatagatggcccagatatggcagttacaaaacttttctcatcttgtaag
agcagtgctaatatgaaagggtatggagtccattgcatgagaaatcttccctcggaaagc
cagattcaggctactgctcaggaggttcaaaatctcctggtttctggtagaaggaaagag
gcccttcagtatgcacaggaaggtcaactttggggacctgcattgatccttgctttacaa
ctgggtgataagttttatgcggatactgtgaagaaaatggctcactgccattttgtgtct
gggtcaccgttgaggacattgtgccttcttattgctggacaacctgcagatgttttcagt
tctgagaacccgatcaacagtggttctttgtatacaccccaccagcctgtagaggttgcg
cctaagggtatgctggatgactggcaagagaatttggctattataacagcaaacagaacc
aaaggtgatgaccttgtaattacccaccttggtgattgcctttggaaagagaagaacgag
gttgcatcagcccactcttgctatttagttgctgaactaaatattgattcgtactctgaa
agtgcaaggatgtgcctcattggcgcagaccatctgaggtgtccacgcacatttgccagc
cctgaagccatccagagaacagaagtgtatgaatatgcaaaggttcttggtaattctcag
tatatactcttgccatttcaaccgtacaagctgatatatgcatatatgcttgcggagatt
gggaaggtttctgattcgctaaggtattgtcaagcatctctgaaggtgctgaaggcctct
ggccgcacacctgaactagaagcatggaaacaattgttttcaaccctggaggagcgaata
cgcacctatcaacagggtggatatgcgacaaatctggcccctggaatgattgttgggaag
cttttcacatcacttgataaatctttgtcccgaatgatgggtacacaatctgcaccaatg
ccgccactgccaccgggcggcgcaaatgaaagagatgtctattctcctccggatacaaaa
gttgcaaataaccagtcagtaatgtccatgtcacctctaatgtcttctgcttctgagcag
tctatgagcgagatggcaggaaattgcggccctggcagggaagttgcacataacagaagt
atttctgagccagactttggcaaaaccccacaaaagcaggctgctgggtcaagtaagaca
caaagcacatcaggttccggaagttctcgtttcggatggttggtgcagaagacagtgggg
cttgtttcaaaatctcatcgtcaggcaaagttaggggaacagaacaagttctactatgat
gagaagctgaagcggtgggtggaagaaggtgctgaggtccctgccgaggagcctccactc
cccccgcctcctacaaaatcctcattccagaacagtattccagagtcgaaattgaatggt
cccccggttgttggaggttatactgctaatggatttgcagaagctaaagctttgaaccct
tcggagcctagttctgggatgccaccgatgccacccacccagaaccaattctcagcacgg
ggaaggatgggtgtaagatcaaggtatgttgacactttcaacaagggtggtggtggtggt
gcaaatgcttttggtgcagcaacaatgtatagcaaaccagctgctccatcaatgagttcg
ctgtcgggtgcaaaattctttgtgccaactcctgctgctgctgctgctgctgcttcagaa
caggcagctgctgatgcaacaatggatgcccacagtgaaaccactcaacaggctgaaccc
tcatcctcaccagcggtggaggcagcagcattcagttcattggcaccaccagtacccatg
cagtcaaccattcagcggtacccaagtggggacaacattcagcggtacccaagtatggac
aacatcgtgccccccgcagacagcgctggcagctcgatgtcgaggtcaagagcgtcgtca
tggagtggagcgtacccggagcatttgagcggcactgctgtttccagatcacccgaagga
cagaccatgccgccaccaatgatgcctggaaagaggccaccgcacagccgttccagcagc
aactcatcgctgcagttcaatggtttgggtgaggatctgcacgaggtggagctctga
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integrated database retrieval system
