Panicum virgatum (switchgrass): 120670196
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Entry
120670196 CDS
T07260
Name
(RefSeq) U-box domain-containing protein 12-like isoform X1
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120670196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120670196
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120670196
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120670196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
zf-RING_UBOX
ARM_LIN_C
zf-C3HC4_4
Arm_2
ARMC9_ARM
zf-Nse
zf-C3HC4_2
HEAT_EZ
zf-C3HC4
zf-RING_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
120670196
NCBI-ProteinID:
XP_039806190
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All DBs
Position
4N:113081..115651
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AA seq
643 aa
AA seq
DB search
MSSSNSLGWWGRRPLRSIASDLISIRSRPAVHLSPTTTAVAAKAMPARVAAEIAALPEPR
GPMRRLCGDLARRIRLLAPLLQQLQGALPLADALGAARDLLRAVHDGSKIYQAMRGDGLL
DRFASVNRQIQLALDALPYHTFDMPEEVQEQVALVHSQFKRAATRTDPPDAQLAKDISSA
LADKTFDPLAFTRISEKLQLQTMADIKKESVALHEMVISSGGEPDGCVEEMSSLLMKLKD
CVITEKAPAPETLTARSASIKHRSPIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKW
LDSGHKTCPKTQQPLSHTSLTPNFVLKSLIAQWCEANGIELPKNKANSRDKKSAKSSDYD
HAGLVSLMTRLRGGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRT
QEHAVTALLNLSIHENNKASIVGSHAIPKIVEVLKTGSMEARENAAATLFSLSVVDENKV
TIGGAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKTRAVKAGIVIHLMNFLVDPT
GGMTDEALTLLAILAGNPEARAVIAQSDPIPPLVEVIKTGSPRNRENAAAILWSLCCADV
EQTRAAKAAGAEDALKELLESGTDRAKRKSSSILELMRQAEEA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctccaactcgttgggttggtgggggcggcggccgcttcgttcaattgcatcg
gatctgatctcgattcgctcccgccccgccgtccatctatcacccaccaccacggctgtt
gcggcaaaggccatgcctgcgcgcgtggcggcggagatcgccgcgctcccggagccgcgc
gggcccatgcgccgcctctgcggcgacctcgcgcgccgcatccgcctcctcgcgcccctc
ctccagcagctccagggcgccttgcctctcgccgacgcactcggggcagcgcgcgacctc
ctccgcgcagttcacgacggcagcaagatctaccaggcaatgcgaggggatggcctgctc
gaccgcttcgcaagcgtcaacaggcagattcagctggccctggatgccttgccttaccac
accttcgacatgcctgaagaagtgcaggagcaggtcgcgcttgtgcattctcagttcaaa
agggctgccaccagaacggatccaccagacgcgcagctagcaaaggatatatcctccgcc
ctcgctgacaagacctttgaccctctggctttcacaaggatctcagagaagctgcaactg
cagaccatggccgatatcaagaaagaatctgtcgccctgcacgagatggtcatctccagt
ggcggcgaacctgatggctgcgtcgaggagatgtcttccttgctcatgaagctcaaagac
tgtgtcatcactgaaaaagctcccgcaccagagacactcaccgccaggtctgcctccata
aagcacagatctccaatcatccctgatgaattcagatgcccgatatcccttgagctcatg
caagaccctgtcatcgtttccagcggacagacatatgagcgatcgtgcatccagaaatgg
cttgattctggacacaagacgtgccctaagacacagcagcctctctcacatacctcactg
acaccaaacttcgtcctcaaaagcctaatagctcagtggtgtgaagccaacggcattgag
cttccgaagaacaaggcaaattccagggataagaaatcagcaaaaagctctgactatgac
catgctggtctagtctcgctaatgaccaggctgaggggtgggaaccaagatgagcagcgg
gctgctgctggtgagatccgtttgcttgcaaagagaaatgtcaacaaccggatatgcatt
gctgaagcaggagcaattcccttgcttgtcaatctactctcctcttcggatccaagaacg
caggaacatgctgtcacagcgcttcttaacctctccatccatgagaacaacaaggcaagc
attgtgggctctcatgctatccctaaaattgtggaagtgctgaaaactgggagcatggaa
gccagagagaatgcagccgccacattattcagcttgtcagttgtcgatgaaaacaaggtt
acaattggtggtgctggcgcaatacctccactcattaatcttctgtgtgatgggagccca
agaggcaagaaagatgcagcaacagcaatttttaatctgtgcatatatcagggaaataag
acccgagcagtcaaagctggaatcgtcatccatctgatgaacttcttggtggatcctacc
gggggaatgactgatgaggcactcactcttctggctatccttgctggtaatcctgaagcc
agggctgtaattgcacagtcggatccgattcccccacttgtagaggtaattaaaacaggg
tctcctcgcaacagagaaaacgctgcagccattctgtggtcgctttgttgtgctgatgtt
gagcaaacgagggctgcaaaagctgctggagcggaggatgcactcaaggaactgttggag
tctggcacggaccgtgcaaagagaaaatcttctagcattctggaactcatgcggcaagct
gaagaagcttga
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