Panicum virgatum (switchgrass): 120670230
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Entry
120670230 CDS
T07260
Name
(RefSeq) cyclic nucleotide-gated ion channel 1-like isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
120670230
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvir04040
]
120670230
Ion channels [BR:
pvir04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120670230
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
SPE9_EGF_2nd
Motif
Other DBs
NCBI-GeneID:
120670230
NCBI-ProteinID:
XP_039806226
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All DBs
Position
4N:complement(31558799..31570980)
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AA seq
708 aa
AA seq
DB search
MMMGKEDRYVRFQDWRSEQSVSSENIVVPRRNDVSVFDSLKERTARVFAFLGNLLHSETS
NRSMVNERKSATGTLHPQGPFLQKWNRIFVISCIFAVSVDPLFLYIPVISDEKPCWYLDR
KLEKAASVLRFFTDIFYILHIIFQFRTGFLASSPTTFGRGVLIEDRYAITKRYLSTYFFI
DVFAILPIPQVIILVVLPNLQDSDVMKAKNVLMIIIICQYVPRLIRIRPLYLQITRSAGV
ITETARAGAAFNLLLYMLASHVLGAIWYLLSIQRQDSCWRHQCRNNTTCAADAASLYCGA
VHKNETYAFLNTVCLLGVPTNNLPDPVFGIYAPAIKNISQSRSFFTKLFYCVWWGLQNLS
SLGQNLKTSTYAWENLFAVFVSISGLVLFALLIGNVQTYLQSASLRIEETRMKSRDTDQW
MSYRHLPENLKERIRRYEQYRWQETSGVDEEQLLMNLPKDLRRDIKRHLCLSLLMRVPMF
ENMDEQLLDALCDRLKPILYTEDSCIIREGDPVTEMLFIMRGNLMSMTTNGGRTGFFNSD
VLKGGDFCGEELLTWALDPTSTSSLPSSTRTVKTISEVEAFALRAEDLRFVATQFRRLHS
KQLQHTFRFYSQQWRTWAACFIQAAWHRYCRKKIEDSLRLKEKRLQFAIVNEGSTSHSFM
AALYASRFAGNMIRILRRNATRKARLQERVPARLLQKPAEPNFSVEEQ
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgggaaaagaggacagatatgtgagatttcaggactggagatcagagcagtct
gttagctcagagaacatagttgttcctcgtagaaatgatgtttcagttttcgattcactt
aaagaaagaactgccagagtttttgcattccttggaaaccttttgcactcagaaacctca
aatagatcaatggtgaacgaaagaaagtctgcaacaggaactcttcatccccaagggcca
tttctacaaaaatggaataggatatttgtgatatcatgtatatttgcagtttcagtggac
ccattgttcttatatatcccagttatcagtgatgaaaaaccttgctggtacttggataga
aagttggaaaaggcagcaagtgtcctgcgttttttcacagatattttctacatactccat
atcatatttcagttccggacaggcttccttgcatcatctcctacaacttttggtcggggt
gtcttgattgaagatagatatgcaataaccaagcgatacttatcaacatatttttttatt
gatgtcttcgctattctacccatccctcaggtgattattttggttgtgttacctaatctt
caagactcagacgttatgaaagctaaaaatgtcttgatgattataattatatgccaatat
gtgcctcgactaatccgaataagaccactatatctacaaatcacaaggtctgctggggtt
attacagagacagcacgggctggtgctgctttcaatcttttactttacatgcttgccagt
catgtccttggagcaatttggtacttactttctatccaacgccaagattcctgctggaga
catcagtgtagaaacaatacaacatgtgctgcagatgctgcatctttatactgtggggct
gttcataagaatgagacctatgcttttttaaatactgtttgcttattaggtgtcccgaca
aacaatcttccagatccagtctttggaatttatgcgccagctataaaaaatatatcacaa
tcaagaagtttctttacaaaattgttctactgtgtttggtggggtctgcaaaatctcagt
tctcttggccaaaacctgaaaacaagcacttatgcatgggagaatttatttgcagttttt
gtctcaatatcaggtttagttctgtttgcgctgcttattggtaatgtgcagacctatttg
caatcagcttctctgagaatagaggaaacaagaatgaaaagccgcgatacagatcagtgg
atgtcatatcgacatcttcctgagaatctcaaagaaagaatacgacgttatgaacagtac
agatggcaagaaacaagtggtgttgatgaagaacaactccttatgaacctccccaaagat
cttaggagggacataaaacgacatctttgtttatcacttctcatgagggttccaatgttt
gaaaatatggacgaacagctcttggatgccttgtgtgaccgcctaaagcccattctatac
acagaagatagctgcatcattcgtgaaggggatccagtaaccgaaatgctcttcatcatg
cgaggaaatctaatgagcatgacgacaaacggtggaagaactggcttcttcaactccgat
gttctgaaaggtggagatttctgtggcgaggagctcctcacctgggctcttgaccccaca
tcaacatcaagcctccccagctcaacaaggacggtgaaaactatatccgaagtcgaagct
tttgctttgagggctgaagacttgaggtttgtggccacccagttcagacgactccacagc
aagcagctccagcacactttcaggttctactcgcagcagtggagaacctgggctgcctgt
ttcatccaagcagcctggcaccggtactgcaggaagaagattgaagattccttgcgcttg
aaggagaagaggctgcagtttgcgattgtgaatgaaggctccacctctcacagcttcatg
gcagcactatatgcttcacgtttcgctggaaacatgataaggatcctgaggagaaacgcc
actcgcaaggcgcgcctccaggaacgagtgcctgcaaggctgctgcagaagccagcggaa
cccaacttctccgtagaagagcagtag
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