Panicum virgatum (switchgrass): 120670293
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Entry
120670293 CDS
T07260
Name
(RefSeq) ABC transporter G family member 42 isoform X1
KO
K08711
ATP-binding cassette, subfamily G (WHITE), member 2, PDR
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120670293
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120670293
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCG (White) subfamily
ABCG2, 3 subgroups
120670293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane
ABC_tran
PDR_assoc
ABC2_membrane_7
ABC_trans_N
AAA_21
AAA_16
AAA_29
AAA_25
AAA
AAA_33
AAA_28
AAA_30
RsgA_GTPase
TIP49
Motif
Other DBs
NCBI-GeneID:
120670293
NCBI-ProteinID:
XP_039806314
LinkDB
All DBs
Position
4N:complement(32276059..32286300)
Genome browser
AA seq
1501 aa
AA seq
DB search
MEGAMEKVWESGRRASRSISRGMGMDAWGVDEAFMPRGGSRSRSRRGSRGADDDEEALRW
AAIERLPTYSRVRTAILSSVAEAEAGAGAGGKPRQPQFKEVDVRKLGVGDRQEFIERVFR
VADEDNQRFLQKLRNRIDRVGIELPTVEVRFEQLTVKAKCHVGSRALPTLLNTARNIAEG
ALGLCGIRLGRQATLTILRDVSGVVRPSRMTLLLGPPSSGKTTLLLALAGKLDPALRRAG
EVTYNGFALDEFVPQKTAAYISQTDVHVGEMTVKETLDFSARCQGVGTKYDLMTELTRRE
KEAGIRPEPEVDLFMKATSMEGVQSSLQTDYTLRILGLDICADTIVGDQMQRGISGGQKK
RVTTGEMIVGPTKVLFMDEISTGLDSSTTFQIVKCLQQIVHLGEATILMSLLQPAPETYD
LFDDIILLSEGQIVYQGPREYVLEFFESCGFRCPERKGTADFLQEVTSRKDQEQYWANKQ
RPYRYISVPEFAQRFKRFHVGLQLENHLSLPFDKSRCHQAALVFSKHSVSTTELLKASFD
KEWLLIKRNSFVYIFKTIQLVIVALVASTVFLRTHMHTRNVDDGFVYIGALLFSLIVNMF
NGFAELSLAITRLPVFYKHRDLLFYPAWVFTLPNVVLRIPFSIIESVVWVLVTYYTIGFA
PEADRFFKHLLLVFLIQQMAGGLFRAIAGLCRSMIISHTGGALSLLIFFVLGGFLLPKGF
IPKWWIWGYWISPLMYGFNALAVNEFYAPRWMNKFVMDQNGVPKRLGISMLEGANIFVDK
NWYWIGAAGLLGFTIFFNVLFTLSLMYLNPLGKPQAVISEETAQEAEGNEHARGTVRNGS
TKSKDGGHSKEMKEMRLSARLSNCSSNGVSQVMSIGSNEAAPRRGMVLPFNPLAMSFDNV
NYYVDMPAEMKQQGVQDNRLQLLREVMGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG
YIEGDIRIAGYPKNQATFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPEMIGDQEITD
DIKIQFVDEVMALVELDNLKDALVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTS
GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGQLGRN
SQKMVEYFEAIPGVPKIKDKYNPATWMLEVSSIAAEVRLKMDFAEYYKTSDLYRQNKVLV
NQLSQPEPGTSDLYFATQYSQSIIGQFKACLWKQWLTYWRSPDYNLVRFSFTLFVALLLG
SIFWRIGTKMGDANTLRMVIGGMYTAVMFVGINNCSTVQPIISIERTVFYRERAAGMYSA
MPYAIAQVVMEIPYVFVQTTYYTLIVYAMMSFQWTAAKFFWFFFISYFSFLYFTFYGMMT
VSISPNHEVAAIFAAAFYSLFNLFSGFFIPRPRIPRWWIWYYWICPLAWSVYGLIVTQYG
DLEEVIEVPGQSKQTISYYVTHHFGYHRNFMPVVAPVLVLFAAFFAFMYAVCIKKLNFQQ
R
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgcgatggagaaggtgtgggagtcggggcggcgggcgagccggagcatcagc
cggggcatgggcatggacgcgtggggcgtcgacgaggccttcatgccgcggggcggctcc
cgctcccgctcccgccgcggcagccgcggcgccgacgacgacgaggaggcgctgcgctgg
gcggccatcgagcgcctccccacctacagccgcgtgcgcaccgccatcctctcctccgtc
gccgaggccgaggccggcgccggcgccggcggcaagccccgccagccgcagttcaaggag
gtggacgtgcgcaagctcggcgtcggggaccgccaggagttcatcgagcgcgtcttccgc
gtcgccgatgaggacaaccagcgcttcctgcagaagctccgcaaccgcatcgacagggtg
ggcatcgagctgccgacggtggaggtgcggttcgagcagctgacggtgaaggccaagtgc
cacgtgggcagccgcgcgctgccgacgctgctcaacacggcgcgcaacatcgccgagggc
gccctggggctctgcggcatccggctggggcggcaggccacgctgacgatcctcagggac
gtctccggcgtggtccggccgtcccggatgacgctgctgctgggcccgccatcgtcgggg
aagaccacgctgctgctcgccctcgccggcaagctggacccggcgctccggcgcgccggc
gaggtcacctacaacgggttcgcgctggacgagttcgtgccgcagaagacggcggcgtac
atcagccagaccgacgtgcacgtcggcgagatgacggtcaaggagacgctcgacttctcc
gccaggtgccagggcgtcggcaccaaatacgatcttatgaccgagctgacgaggagggag
aaggaggccggcatccgcccggagcctgaagtcgacctcttcatgaaggccacttcaatg
gaaggagtgcaaagcagtctccaaacggattacactctcaggatacttggactcgacatc
tgcgccgacaccatcgttggcgaccagatgcagcgggggatctccggtggtcagaagaag
cgtgtcaccacaggagagatgattgttggcccgaccaaggtgctattcatggacgagata
tcaaccggattggatagttccaccacattccaaattgtcaaatgtctccaacagattgtg
cacttgggcgaggccaccatcctcatgtccctccttcagcctgcccctgagacctatgac
ctatttgacgacatcatcctactgtcagaaggccaaattgtttaccagggacctcgcgag
tatgttctcgaattctttgaatcctgtggattccgttgccccgagcgcaagggtactgca
gactttcttcaggaggtgacatcaagaaaggatcaggagcagtactgggccaacaagcag
aggccttacagatacatttccgttccagaatttgcacagcggtttaaacggttccatgtc
gggctccagctagagaaccacctctcactaccatttgacaagagtcgttgccatcaagct
gctcttgtattctcaaagcactcagtgtcaaccacagagctcctcaaggcatcctttgac
aaggagtggctcctcatcaaacgcaattcatttgtgtacatcttcaagaccatacagctc
gtcattgtagcccttgttgcgtcaacggtgtttctaaggacccacatgcacacaaggaat
gtagatgatggctttgtctacattggagcgctgctctttagtctgatagtcaatatgttc
aatggttttgctgagctctctttggccataacaaggttaccggtgttctacaagcacaga
gacctcctcttttaccctgcttgggtcttcacactaccaaacgtcgttctcagaatccca
ttctccataattgaatctgtagtctgggttcttgtcacatactacactatagggtttgct
ccagaagccgacaggtttttcaagcacttgctgctcgtgttcttgatccagcagatggca
ggtgggcttttcagagcaatcgccggactttgcagatccatgatcatttctcacactggt
ggagcactatctcttcttatcttctttgttcttggaggctttctcctgccaaaaggtttc
atccctaaatggtggatctggggctattggatttcacctttgatgtatggatttaatgct
ctagcagtcaatgaattctatgctcctcggtggatgaacaagttcgtaatggaccaaaat
ggtgttccgaaaagactaggcatatctatgcttgaaggcgccaacatctttgttgacaaa
aactggtactggattggagcagcagggctcttgggtttcaccatcttcttcaatgtactt
ttcacactgtcactcatgtatctgaaccctctcggcaagccacaagctgttatatcagaa
gaaactgcacaggaagcggaaggcaatgagcatgcaagagggacagtaagaaatggaagc
acaaaatcaaaggacggtggtcatagcaaggaaatgaaggagatgagattgagtgcgcgt
ttgagcaactgttcatcaaatggggtttcacaagtcatgtccattggcagcaatgaagct
gctccaagaagaggaatggttcttccatttaaccctcttgccatgtcctttgataatgtg
aactactatgtcgacatgcctgcggaaatgaaacagcaaggagtgcaggataacaggctc
caattgttgcgtgaggttatggggtcattcaggccaggagtgctgacagcgcttatgggt
gtcagtggagctggaaagactactcttatggatgtcttggctggaagaaagactgggggt
tacattgaaggtgatatcagaattgctggctatcccaagaaccaagccacatttgcaagg
atttctggttactgcgagcaaaatgatatccattctcctcaggtcacagttagggaatct
ttgatatactctgccttcttgcgccttcctgaaatgattggagatcaagaaatcactgat
gatatcaagattcaatttgttgatgaagttatggcactagtggagcttgacaatctgaag
gatgctttagttggcctaccaggaatcactgggctttcgacagagcaaagaaaaaggtta
acaatagctgtggaactcgtcgctaacccatcgatcatcttcatggatgaaccaacatca
ggtcttgatgcaagagctgcagcaattgtcatgagaacagtgcgaaacacagttgatact
ggacgcacagtggtttgcactatccatcagccaagcattgacatctttgaggcttttgat
gagttgctattgctgaaaagaggaggccaggtgatctactctggacaattgggtcgcaac
tcccagaaaatggttgagtatttcgaggcaattccgggagtgcctaagattaaagataag
tacaatcctgcgacttggatgctcgaagtcagttcaattgcagctgaagtgcgactaaag
atggattttgctgagtactacaaaacatcagatttgtacaggcaaaacaaggtactggtc
aaccagctgagtcaaccagagccaggaacatcagatctttatttcgctacacagtactct
caatccataataggacagttcaaagcctgcctctggaagcagtggttgacctattggcgc
agcccggattacaaccttgttagattttccttcactctgttcgttgccttactgcttggc
tccattttttggaggataggaaccaaaatgggagatgcaaacactctcaggatggttatt
ggaggaatgtacacagctgtgatgtttgttggtatcaacaattgctcaactgtgcagcca
attatttcaattgagaggacggttttctaccgagagagggctgctgggatgtactcagca
atgccctacgccattgctcaggttgtcatggagatcccttatgtgtttgtccaaacaact
tactacaccctcatcgtatatgctatgatgagctttcaatggacagctgccaagttcttc
tggttcttcttcatttcctacttctccttcctctacttcaccttctatggcatgatgact
gtctcaatctcaccaaaccatgaggttgcagccatctttgctgcagctttctattcactc
ttcaatctcttctcgggcttcttcattccaagaccgagaattcctagatggtggatctgg
tactactggatttgcccactggcatggagtgtgtatgggctcatagtgacacaatacgga
gacctggaagaggtcatcgaagtccccggccagtccaagcagacaattagttattacgta
acacatcattttggataccacaggaattttatgccagttgttgcgccggtccttgtgctc
tttgcggcgttctttgcgttcatgtacgcagtctgcatcaagaagttgaacttccagcaa
cgatag
DBGET
integrated database retrieval system
