KEGG   Panicum virgatum (switchgrass): 120670522
Entry
120670522         CDS       T07260                                 
Name
(RefSeq) ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like
  KO
K03798  cell division protease FtsH [EC:3.4.24.-]
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:pvir01002]
    120670522
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:pvir03110]
    120670522
Peptidases and inhibitors [BR:pvir01002]
 Metallo peptidases
  Family M41: FtsH endopeptidase family
   120670522
Chaperones and folding catalysts [BR:pvir03110]
 Other chaperones and cochaperones
  AAA proteases
   120670522
SSDB
Motif
Pfam: Peptidase_M41 AAA AAA_lid_3 FtsH_ext TIP49 AAA_5 AAA_22 AAA_17 RuvB_N AAA_16 AAA_33 LonB_AAA-LID AAA_28 Mg_chelatase IstB_IS21 nSTAND3 AAA_14 DUF5906 ABC_tran AAA_7 Parvo_NS1 AAA_18 TsaE Zeta_toxin
Other DBs
NCBI-GeneID: 120670522
NCBI-ProteinID: XP_039806575
LinkDB
Position
4N:11730446..11733010
AA seq 688 aa
MSPTAMSLIATSRLPICRAHQDVSGKQGPPQKRASSSAKATPPDAGLSRRRVLQSAGLGL
GLGLAAARPGRARAETAAPALAPEGVTSNRMSYSRFLDYLDAGAVRKVDLFENGTVAVVE
LDDPARASRTRRVRVQLPGLPAELLRKLRDRGVDFAAHPVEPNPGLVFLDLLLNFGFPLL
FIATLIWRSATMNNPGAGGGPSLPFGLGKSRAKFQMEPNTGITFDDVAGVDEAKQDFQEI
VQFLKSPEKFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVG
VGASRVRDLFNKAKANAPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFSG
DSGVIVIGATNRPEILDDALLRPGRFDRQVSVGLPDVRGREEILRVHSSNKKLDPDVSLG
LVAMRTPGFSGADLANLMNEAAILAGRRGKDRITVKEIDDSIDRIVAGLEGTSMTDGKSK
MLVAYHEIGHAVCATLTPGHDAVQKVTLIPRGQARGLTWFLPGEDPTLVSKQQILARIVG
GLGGRAAEEVIFGEPEVTTGAAGDLQQVTQVARQMVTTFGMSEIGPWALVEPAAQSGDVV
LRMLARNSMSEKLAADIDRAVKRIIGQAYEVAKEHVRRNRAAIDHLVDVLMEKETLSGDE
FRAILSEYVDIGKEQRETAARTTELVTA
NT seq 2067 nt   +upstreamnt  +downstreamnt
atgtcgccgacggccatgtcgctgatcgcgacgagccgcctgcccatctgccgggcgcat
caggacgtgtccggcaagcaggggcccccgcagaagcgcgcgtcttcctcggccaaggcc
acgcctccggacgcggggctcagccggagaagggtgctgcagtccgcgggtctgggcctc
gggctcggcctcgccgcggcgcgacccgggcgggcgcgggccgagacggcggcgccggcg
ctggcgccggagggcgtgacgtcgaaccggatgtcctactcgcggttcctggactacctc
gacgccggcgcggtgcggaaggtggacctcttcgagaacggcacggtggccgtcgtggag
ctggacgacccggcgcgggcgtccaggacgcgccgcgtgcgggtgcagctcccgggcctc
cccgcggagctgctgcggaagctgcgggacaggggggtcgacttcgccgcgcaccccgtg
gagcccaaccccgggctcgtgttcctcgacctcctcctcaacttcggcttcccgctcctc
ttcatcgccacgctgatctggaggtcggccaccatgaacaaccccggcgccggcggcgga
cccagcctgccgttcgggctcggcaagtccagggccaagttccagatggagcccaacacg
gggatcacgttcgacgacgttgccggcgtggacgaggccaagcaggacttccaggagatc
gtgcagttcctcaagtcgccggagaagttcacggcggtgggggcgaggatccccaagggc
gtgctgctggtggggccgcctgggacggggaagacgctactggcgaaggccatcgcgggg
gaggccggcgtgccattcttctcgctgtccggctccgagttcatcgagatgttcgtcggc
gtgggcgcgtcgcgggtgcgggacctcttcaacaaggccaaggccaacgcgccgtgcctc
gtcttcatcgacgagatcgacgccgtcggccgccagcgcgggacgggcatcggcgggggg
aacgacgagagggagcagacgctgaaccagctgctgacggagatggacgggttcagcggc
gacagcggcgtgatcgtgatcggtgccaccaaccggccggagatcctcgacgacgcgctg
ctccgcccgggccgcttcgaccggcaggtcagcgtcgggctccctgacgtgcgcggccgg
gaggagatcctcagggtgcacagctccaacaagaagctggaccccgacgtgtcgctcggc
ttggtggccatgcgcacgcccgggttcagcggcgccgacctcgccaacctcatgaacgag
gccgccatcctcgccggccgccgcggcaaggaccgcatcaccgtcaaggagatcgacgac
tccatcgaccgcatcgtcgccggcctcgagggcaccagcatgaccgacggcaagagcaag
atgctcgtcgcctaccacgagatcggccacgccgtctgcgcaacgctgacgccggggcac
gacgcggtgcagaaggtgacgctgatcccgcggggccaggcgcgcgggctgacgtggttc
ctgccgggggaggacccgacgctggtgtccaagcagcagatcctcgcgcgcatcgtgggc
gggctcggcgggcgcgccgccgaggaggtgatcttcggcgagcccgaggtgacgacgggc
gcggcgggcgacctgcagcaggtgacgcaggtggcgcggcagatggtgaccacgttcggg
atgtcggagatcgggccgtgggcgctcgtcgagccagccgcgcagagcggcgacgtcgtg
ctgcggatgctggcccggaactccatgtccgagaagctcgccgccgacatcgaccgcgcc
gtgaagcgcatcatcggccaggcgtacgaggtcgccaaggagcatgtcaggaggaaccgc
gcggccatcgaccacctggtggacgtgctcatggagaaggagacgctctccggcgacgag
ttcagggccatcttgtccgagtacgtggacatcggcaaggagcagagggagacggcggcc
aggacaacagagctggtcaccgcttga

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