KEGG   Panicum virgatum (switchgrass): 120670529
Entry
120670529         CDS       T07260                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120670529
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120670529
   03041 Spliceosome [BR:pvir03041]
    120670529
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120670529
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120670529
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120670529
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RRM_Nup35 Calcipressin
Other DBs
NCBI-GeneID: 120670529
NCBI-ProteinID: XP_039806585
LinkDB
Position
4N:33637298..33642885
AA seq 403 aa
MAGYGDENPDAMNGYEEEEEEEEVEEVEEVYEEEEEDGDGEADDGAAVAAAEPTEMRSGG
GGRGIAEVVGDADAGGEEGRDADSGGGDASGKIFVGGVAWETTEETFTKHFQKYGAITDS
VIMKDKHTKMPRGFGFVTFSDPSVIDRVLEDEHVIDGRTVEVKRTVPKEEMSTKDGPKTK
KIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESEDAVERVMSQ
GRMHDLGGKQVEIKKAEPKKPGGGDSSSNGRYSRGGGGHRDSYRGSGGGSSGSSSGGGYG
YGGGYRSAAAYYGSTAYGAYGRGYGYGNTAGYGSGYGSVYGGSMYGGPYGAYGAYGGAYG
GGAYGAPGGYGGAGGYGGYGGAGGMGGGGSTGGRGSRYHPYGK
NT seq 1212 nt   +upstreamnt  +downstreamnt
atggcggggtacggggatgagaacccggacgccatgaacgggtacgaggaggaggaggaa
gaggaagaggtggaggaggtcgaggaggtctacgaggaagaggaggaggacggggacggg
gaggcggacgacggggctgcggtggcggccgcggagcctactgagatgagaagcggaggc
ggaggtcgaggcatagcggaggtcgttggggatgctgacgccggtggcgaggaagggagg
gatgcggattctgggggcggcgacgcctcggggaagattttcgtagggggtgtagcctgg
gagaccaccgaagaaacgttcactaagcattttcagaagtatggtgcaataaccgattcc
gttatcatgaaggacaagcatacgaagatgcctcgtggatttggatttgtcacattttcc
gatccatctgtgattgatagggttctagaggatgaacatgtcatagatggaagaacggtt
gaagttaaaaggactgttccaaaagaggaaatgtcaacaaaagatggtcctaagacaaaa
aagatctttgtgggtggtatcccgccatctcttactgaagataaattgaaagagcacttc
tcctcatatgggaaggtggttgagcatcagattatgcttgaccatagcactgggcgttca
cgaggctttggatttgtcacgtttgaaagtgaagatgctgttgaaagggttatgtcacag
gggagaatgcacgatcttggagggaagcaggttgaaataaagaaagctgagccaaagaaa
cctggcggtggtgattcaagctcaaatgggagatatagtcgtgggggtggtggtcaccgt
gattcttaccgtggcagtggcggtggcagctctgggagcagcagtggcggtggctatgga
tatggaggtggctaccgatcagctgcagcctattatggcagcacagcttatggcgcatat
ggcagaggatatggatatggcaatactgctggctatgggtctggttatggctcagtttat
ggtggttccatgtacggcggtccatatggtgcatacggggcatatggtggtgcctatgga
ggtggagcatatggtgcaccaggaggctacggtggtgcaggaggatatggtggatatggt
ggggctggaggcatgggtggtggtggcagcactggcggtcggggctcgaggtaccaccct
tatggaaaatga

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