Panicum virgatum (switchgrass): 120670884
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Entry
120670884 CDS
T07260
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120670884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120670884
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120670884
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120670884
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120670884
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
120670884
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
120670884
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP60 / Chaperonin
120670884
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
120670884
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120670884
Exosomal proteins of other body fluids (saliva and urine)
120670884
Exosomal proteins of breast cancer cells
120670884
Exosomal proteins of colorectal cancer cells
120670884
Exosomal proteins of bladder cancer cells
120670884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Ribosomal_L12
Motif
Other DBs
NCBI-GeneID:
120670884
NCBI-ProteinID:
XP_039807001
LinkDB
All DBs
Position
2K:20420637..20425226
Genome browser
AA seq
582 aa
AA seq
DB search
MYLTPAAAFSSPSRQLLPRPAGVAPRRRLVVRADVKVISTGEACRRGLAAGIDKLADAVA
VTLGPKGRNVVIDQDDVPKVINDGVTIAKAIELPNALEHAGASLLQEIASKTNSAVGDGT
TTAIVLAREIINLGLLAVATGANPVALRRGMDKAVHELIKILKSKCIPVSTKEDIKAVAS
ISSGNDEYVGNLIADALEKIGPDGIIKIESSSSIYTTVEVQEGMKIDKGYVSPHFITNHD
KALIEFENARVLLTDQRVNEVQEILPLLEKMTQLSVPLLIIAEDVSHTVYSTLVLNKLNG
LLNVAVVKCPGLGDEKKAILQDIAIMTGADFFASDLGWGIHSITSDQLGMAQKITITCES
TTIIAHPSMRPEIEARIMQLKKDVEETTSSYLKERFSARIAKLSRGVGVIKVGAATEAEL
EDRKLRVEDAKNATFAAISEGITPGGGVTYVHLSKHIPSIMDLVDDPEEKMGVNIVGKAL
LVPAMTIARNAGADGSAVVEKLLASEWRVGYNAMTDKFEDLVAAGVVDPCRVARCVLQNS
ASIAGLILMTQAMMFDKIKKKKSPIPQIPGIPPLQISQKAKV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtacctcacacccgcagccgccttctcgtccccatccaggcagctgctgcccaggccg
gccggggtcgccccccgccgccgcctggtggtgcgggcagacgtcaaggtcatatctacc
ggcgaggcctgtcgccgcgggctcgccgccggcatcgacaagctcgccgacgccgttgcg
gtcaccctcggtccgaaagggaggaatgttgttattgaccaagatgatgtccctaaagta
attaatgatggtgtcacaattgccaaggctatagagctcccaaatgcgcttgagcatgcg
ggtgcctcgctacttcaagagatagcatccaagacaaatagtgctgttggtgatggaact
acaacagctattgttttggctcgggaaatcatcaatcttgggttgttggcagttgctact
ggtgctaatccagttgccttgagaaggggtatggacaaagctgttcatgagctaatcaag
atcttgaagagtaaatgtattcctgtgagtacgaaggaggatataaaagctgttgcttca
atatcttctggcaatgatgaatatgttggcaatctcattgctgatgcattggagaagata
ggtcctgatggtataataaaaattgagtcatcatcttcaatatatactacagttgaagtg
caggaaggaatgaagatagacaagggatatgtttctccacatttcatcacaaatcatgac
aaggcgcttattgaatttgaaaatgcaagagtcctcttaactgatcagcgtgtgaacgaa
gtccaggagatacttcctttactggagaagatgacacagttgagtgtccctttattaatt
attgctgaggatgtatcacatacagtgtattcaacactggttcttaacaaactgaatgga
ttgctaaatgttgcggttgttaaatgtcctggtttgggagatgaaaagaaggctattctc
caagatattgctatcatgacaggtgcagatttctttgctagtgaccttggctggggcatt
cacagcattacttctgatcagttaggtatggctcagaagatcacaataacttgtgaatca
acgactatcattgcacatccttcaatgagaccagagattgaggccagaatcatgcaattg
aagaaagatgtagaggagacaacgagttcctatctaaaagaaaggttctctgcaagaatt
gctaaactctcacgaggtgttggagttattaaggttggggcagccactgaagctgaactc
gaggataggaagctgagagtggaggatgcaaagaatgcaacttttgctgccattagcgaa
ggcattactcctggtggtggtgtgacatatgttcatttatcaaagcatattcccagcatc
atggatcttgtggatgacccggaggagaagatgggtgtaaatatagttgggaaggcactt
cttgtacctgctatgacgatagctcgcaatgctggggcagatggttcagctgttgtagag
aagcttcttgccagtgagtggcgagttgggtacaacgcaatgactgataaatttgaagac
cttgttgctgctggtgtggtagacccatgcagggtcgccagatgtgtgctccagaactcg
gcctctatcgcaggactaattcttatgacccaagctatgatgtttgacaaaataaagaag
aaaaaatcccctatcccgcagattccaggcattccaccattgcagataagccaaaaggcc
aaggtttga
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