Panicum virgatum (switchgrass): 120670995
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Entry
120670995 CDS
T07260
Name
(RefSeq) coatomer subunit beta'-2-like isoform X1
KO
K17302
coatomer subunit beta'
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120670995
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120670995
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120670995
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
120670995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_HPS5
PEP5_VPS11_N
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR75_2nd
TPR_1
Beta-prop_WDR35_TULP_N
TPR_2
TPR_GEMI5
HEAT_GCN1
TPR_8
WD_LRWD1
Clathrin
Motif
Other DBs
NCBI-GeneID:
120670995
NCBI-ProteinID:
XP_039807122
LinkDB
All DBs
Position
4N:38914404..38926110
Genome browser
AA seq
911 aa
AA seq
DB search
MPLRLEIKRKLAQRSERVKSVDLHPTEPWIMSSLYSGSVCIWNYQTQTMVKSFEVSELPV
RSAKFIPRKQWVVAGADDMFIRVYNYNTMDKVKMFEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWDKGWMCTQIFEGHSHYVMQITFNPKDTNTFASASLDRTVKIWSLGSPDPNFT
LDGHSKGVNCIDYFTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPE
LPIIMTGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVIGYDEGTIMIKIG
REEPVASMDSSGKIIWAKHNEIQTVNIKAVGADTEIADGERLPLAVKELGSCDLYPQSLR
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEIVWSTDGEYAVRESPSKIKIYSKNFQ
ERKSIRPAFSAERIHGGVLLAMCTNDFICFYDWAECRLIRRIDVNVKNVYWADSGDLVTI
ASDSSFYILKYNRDLVSSHLDGGASVGEEGVEDAFELLHEINERVRTGLWVGDCFIYNNS
LWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFHVVGYTLLLSLIEYKTLVM
RGDLERANTILPSIPKEQHNSVAHFLESRGMLEEALDIATDPNYRFDLAVQLGSLEIAKE
IAVEARSESKWKQLGELAMSTGKLEMAEECLLQATDLSGLLLLYSSLGDAEGITKLACMA
KELGKNNVAFLCLFMLGKLEECLQLLVDSNRIPEAALMARSYLPSKVSDIVSIWKKDLQK
VNSKAAESLADPAEYPNLFEDWQIALSVESTLAPKRGVYPPAEEYMTYAERPNESLVEAF
KSMNMEEEIPSENGDPAHEVIEDDGVEESQEESQEDAVEVEPDGSIDSGVLVNGNDGEEH
WGMNNEGTSSA
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttcggttagagatcaagaggaagctcgcgcagaggtcggagagggtcaagtcc
gtcgacttgcatccaaccgaaccatggatcatgtcaagcctttattctggcagtgtctgc
atctggaactaccagacgcagacaatggtgaaatcgtttgaagtcagcgagttaccagtt
cgttcggctaaatttattccacgaaagcaatgggttgtggctggtgctgatgacatgttc
atccgtgtgtataactataatactatggataaggtgaagatgtttgaagctcacactgat
tacattaggtgtgtggctgttcacccgaccttgccttatgtgttgtcatcatcagatgac
atgctcataaagctctgggactgggataagggctggatgtgtactcaaatctttgagggc
cactctcactatgtcatgcaaatcacatttaacccgaaggacacaaatactttcgccagt
gcttcccttgatcgtactgtaaagatctggagtcttggttcacctgatcctaacttcaca
ttggatggtcattcaaaaggtgtaaactgtatagattacttcactggtggtgaccggcca
tatctaattaccggctctgatgaccaaactgcgaaggtttgggattatcaaacaaagagc
tgtgttcaaacacttgaaggacatgcccataatgtctctgctgtatgtttccatcccgag
cttccaataataatgacaggttcagaggatggaactgttcgtctatggcactcaactacc
tacaggcttgagaatacacttaactatggccttgaacgagtttgggcattaggttacatg
aagggctcacggagagttgtgattggatatgacgaaggaacaataatgattaagattggc
cgtgaagaacctgttgctagcatggatagcagtggtaaaatcatatgggccaagcataat
gaaattcaaactgttaatatcaaggctgttggcgcggacactgagatcgcagatggtgaa
cgtctgccattggctgtaaaggagctgggaagttgtgatctttacccacaaagtttaaga
cacaatccaaatgggaggtttgttgttgtatgtggagatggagagtacattatctacaca
gcgctagcatggagaaatagatcctttgggtctgctcttgaaattgtctggtcaactgat
ggagagtatgctgtaagggaaagcccatcaaaaataaagatctacagtaaaaactttcag
gagaggaaaagtataagaccagcattctctgccgaacgtatacatggtggggtattgctt
gcaatgtgtacgaatgacttcatttgtttctatgactgggcagagtgcaggttgatacgt
cgaattgatgtgaatgtaaaaaatgtatattgggctgacagtggtgatttggtaacaata
gcaagtgattcatcattctacattttgaagtacaatagggatctcgtttcttctcatcta
gatggaggggcttcagttggtgaggaaggtgtggaagatgcctttgaattgcttcatgag
ataaatgaacgtgtccgtactgggttatgggtcggagattgtttcatatacaataattct
ttatggcggctaaattactgcgttggaggagaggttactacaatgtttcacttggaccgg
cctatgtatttattaggatatcttgctaaccaaagtcgtgtatatctaatagacaaggag
ttccatgtggtgggttatactttactactcagtttgattgagtacaaaacactcgtgatg
cgtggggatttggaacgtgcaaataccattttaccatcaataccaaaggaacaacacaac
agtgtggcacattttcttgaatcacgtggcatgttggaggaagcccttgatatagcgact
gaccctaattacagatttgacctggctgtgcagcttggcagcctggaaattgcaaaggaa
attgctgttgaggcgcgaagtgaatcaaagtggaagcagctgggggaacttgctatgtcc
actggaaagctcgagatggcagaagaatgtctgcttcaagctacagaccttagtgggtta
ttgcttctatattcatcacttggagatgctgaagggataacaaaactggcgtgcatggct
aaagagctaggaaagaacaacgttgctttcctttgcttgtttatgctaggcaaattggaa
gaatgccttcaattgttggttgatagcaaccgtattcctgaagcagcattgatggcacga
tcatatcttccaagcaaagtttctgatattgtttcaatatggaaaaaggatcttcaaaag
gtgaactccaaagctgcagaatctctggcagatcctgccgagtacccaaacctgttcgag
gactggcagattgctctcagtgtagaatctactcttgctcccaagaggggtgtctatcca
cctgctgaggagtacatgacttatgcggagaggcccaatgagagccttgtggaagctttc
aaaagtatgaatatggaagaagagataccaagtgagaatggagatcctgctcatgaggtc
attgaggatgacggagtcgaggaaagtcaggaggaaagtcaggaggatgccgttgaagtt
gaacccgatggttcaatagatagtggtgttcttgtgaatgggaatgatggcgaggaacac
tggggtatgaacaatgaaggaacttcatcagcatga
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