Panicum virgatum (switchgrass): 120671063
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Entry
120671063 CDS
T07260
Name
(RefSeq) protein argonaute PNH1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120671063
03036 Chromosome and associated proteins [BR:
pvir03036
]
120671063
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120671063
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120671063
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120671063
microRNA pathway
RISC loading complex
120671063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
120671063
NCBI-ProteinID:
XP_039807231
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All DBs
Position
4N:39528171..39542106
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AA seq
957 aa
AA seq
DB search
MLEVLDMAPPPQSRHQQGPAGARGASGGHATGRKQPLQSSVAQPKAEPAVVPPEGGKRCG
AGGGRRRGGRGRAKAAAAEPRALPAPPPRTVIGPPVPSKGLSFCRRPGFGTIGARCVVKA
NHFLAELPDKDLTQYDVKITPEVSSRAVNRAIMAELVRLYRASDLGMRLPAYDGRKNLYT
AGTLPFDAREFVVRLADEDDGTGVPPREREYRVAIKFAARADLHHLRQFIAGRQADAPQE
ALQVLDIVLRELANQRYVSIGRSFYSPDIRKPQRLGDGLQSWCGFYQSIRPTQMGLSLNI
DMSSTAFIEPLPVIEFVAQILGKDVISRPLSDANRIKIKKALRGVKVEVTHRGNVRRKYR
ISGLTTQPTHELIFPIDDQMNMKSVVEYFKEMYGFTIQHPHLPCLQVGNQKKANYLPMEA
CKIVEGQRYTKRLNEKQITSLLKVTCQRPREQEMNILQTVHQNGYEQDPYAKEFGINISE
KLTSVEARVLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVSHWACINFSRSVPE
ATARGFCQELAQMCQISGMEFNSEPVIPIYSARPDQVVKALKHVYNIALNKLKGKELELL
LAILPDNNGPLYGDIKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTV
LLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLVCAQA
HRQELIQDLYKTWHDPQRGTVTGGMIRELLISFRKATGQKPLRIIFYRDGVSEGQFYQVL
LYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHKDRSSMDKSGNILPGTVVDS
KICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVS
VVPPAYYAHLAAFRARFYMEPEMSENQTSKSSNGTNGASVKPLPALKEKVKRVMFYC
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaggtcctggacatggcgccgccgccgcagtcgcggcaccagcaggggcccgcc
ggcgccaggggcgccagcggcggccacgcgacggggaggaagcagccgctgcagagcagc
gtggcgcagcccaaggcggagccggccgtcgtgccgccggagggaggcaagcggtgcggc
gcaggaggagggaggcgccgcggcgggcgcggccgggccaaagcggcggcggcggagccg
agggcgctcccggcgcccccgccgcgcacggtcattgggccgcccgtgcccagcaagggg
ctgtcgttctgccggcgcccgggcttcgggaccatcggcgcgcgctgcgtcgtcaaggcc
aaccacttcctcgccgagctccccgacaaggacctcacccagtacgacgtcaagatcacg
ccggaggtgagctcgcgggccgtgaaccgggccatcatggcggagctggtccgcctctac
cgcgcgtccgacctcgggatgcgcctcccggcctacgacggccgcaagaacctctacacc
gccgggaccctcccgttcgacgcgcgcgagttcgtcgtgcgcctcgccgacgaggacgac
ggcaccggcgtcccacctcgggagagggagtacagggtcgccatcaagttcgccgcgcgc
gccgacctccaccacctccggcagttcatcgccgggcggcaggcggacgcgccgcaggag
gccctgcaggtcctcgacatcgtgctccgggagctcgccaaccagaggtacgtgtccatc
ggccggtccttctactcgccggatatcaggaagccgcagcggctcggcgatggcctccag
tcctggtgtgggttctaccagagcatccggccgacccagatgggattgtcgcttaacatc
gacatgtcgtctacagcgtttatcgagccgctgccggtgatcgagttcgtggcccagata
ttagggaaggatgtcatatcaaggccgttgtccgatgctaaccgaatcaagatcaagaag
gcactgcgaggcgtaaaagttgaggtcactcaccgaggaaatgtaaggcggaagtatcgc
atttctggactgacaacacaaccaactcatgaactgattttcccaattgatgatcaaatg
aatatgaaatccgtagtggagtacttcaaggaaatgtatgggttcaccattcagcatcct
caccttccctgccttcaggttggaaaccaaaagaaggcaaactatcttccgatggaggcc
tgcaagattgttgagggccagagatacacgaagaggctgaatgaaaaacagatcacatca
ctgctaaaggttacatgccaaagacctagagaacaggagatgaatattcttcagaccgtt
catcaaaatggatacgagcaagatccatatgcaaaggaatttgggatcaacataagtgag
aagctaacctccgttgaagctcgagtccttcctgcaccttggttgaaatatcatgatact
ggaaaagagaaagagtgcttgccacaggttggtcaatggaacatggtaaacaagaaagtg
atcaacggatgcaaggtgagccattgggcctgtataaacttctcacggagtgttccagaa
gccactgctcgggggttttgccaggaattggcacaaatgtgccagatttccggcatggaa
tttaacagtgagcctgtgataccaatatattcagctagaccggatcaagtagtaaaggca
cttaaacatgtgtataatattgcattgaacaaactcaagggtaaagaacttgagcttctt
ctggccatcctccctgacaataatggtccattgtatggtgacatcaaacgtatttgtgaa
actgatttgggattgatatcgcaatgttgcttaacaaagcatgtttttaagatcagcaag
cagtacttggcaaatgtctccctgaaaattaatgttaagatgggaggaagaaacaccgtg
ctcttggatgctataagttggaggattcctttggtcagtgacataccaacgattatattt
ggtgcagatgtaacacatcctgaaactggggaggactcaagtccatcaattgctgcggtt
gttgcatctcaagattggccagaagttacaaagtatgccgggttggtttgtgctcaggca
caccggcaggagctcattcaggacctttacaagacatggcatgatcctcagagagggact
gtaacaggcggcatgatcagggagctgttaatatccttcaggaaagccactgggcagaaa
ccattgagaataattttctacagggatggtgttagtgaaggtcaattctatcaagttctc
ctttacgagttagatgctatccgaaaggcatgtgcatccctagaaccaaattaccagcct
cctgtaacgtttgtggtggttcaaaaacgtcatcatacaagactatttgcaaacaatcac
aaagatagaagcagcatggacaagagtggaaatattttgcctggaacagtcgttgattct
aagatatgccatccaacggagtttgatttctacctctgtagtcatgctggaattcaggga
acaagtaggcctgctcactaccacgtcctctgggatgagaacaatttcacagcagacgaa
atgcagacattgacaaacaacctttgctacacttacgcccggtgcacacgctcggtttct
gttgtcccgcctgcatactatgcccacctggccgcattccgggctcggttctacatggaa
ccggagatgtcagagaaccagacatcaaagagctccaacggcaccaatggagcatcggtg
aagcccctgcccgccctaaaggagaaggtgaagagggtgatgttctactgctga
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