Panicum virgatum (switchgrass): 120671153
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Entry
120671153 CDS
T07260
Name
(RefSeq) cell division cycle protein 27 homolog B-like isoform X1
KO
K03350
anaphase-promoting complex subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120671153
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120671153
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120671153
03036 Chromosome and associated proteins [BR:
pvir03036
]
120671153
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
120671153
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Other subunits
120671153
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Sister chromatid separation proteins
APC/C complex
120671153
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_12
ANAPC3
TPR_11
TPR_19
TPR_17
TPR_16
RMD1-3
TPR_CcmH_CycH
TPR_14
TPR_7
CFAP70_TPR_C
TPR_9
CFAP70_mid_TPR
TPR_10
TPR-S
TPR_Psidin_N
TPR_NPHP3
TPR_INTS8_3
ARM_TT21_5th
ARM_TT21_C
TPR_Slam
ANAPC8
ARM_TT21_N
DUF7017
Comm
HIR3_bundle
TTC22_C
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
120671153
NCBI-ProteinID:
XP_039807354
LinkDB
All DBs
Position
4N:complement(41563597..41575180)
Genome browser
AA seq
759 aa
AA seq
DB search
METLMVDRVHSSLRLFMHRNAVFLCERLCAQFPSETNVQLLATCYLHNNQPYAAYHILKG
KKLPESRYLFAMSCFRMNLLHEAEDTLCPVNEPNIEVPNGATGHYLLGIIYRCTGRMSAA
AEQFTQALTLDPLLWAAYEELCILGVAEDADECFSEATALRLQQEHTSTSALEKSNFANE
NRILTSSLPSSLGDIIPKQMKQLHANNTAEVPSYPHVRATALHVQNSTTSNVAQFDTPSP
TATQTSSIVPPPLFRNAHAYQNTISGDAPAKPKANGSNQPLRRKYLDQARLKKVSGRLFN
QSSDSMPRRSARLSRDMTINSNSNSNISQFGGNGTDHSSGKLRVNSSTPSKLCSTAVRSV
QVMKGKPRATENFDEGSRYEVIDEMWTDNVPATSSSASTTEGRFFEQDKAERIMSQDSKV
AIGIRELLGLLRTLGEGFRLSCLFKCQEALEVFRKLPESQFNTGWVLCQVGKAYFELVDY
LEADHYFELAHLLSPCTLDGMDIYSTVLYHLNAEMRLSYLAQELISIDRLSPQAWCAVGN
CFALRKDHETALKNFQRAVQLDSRFAYAHTLCGHEYSALEDYENSLKFYRCALQVDERHY
NAWYGLGVVYLRQEKFEFAEHHFRRAFQINPRSSVLMCYLGMALHSLKRNEEALEMLEKA
IATDKKNPLPKYQKALILSGLQKYAEALEELERLKEIAPHESSMYALMGKIYKQLNILDK
AVFCFGIALDLKPPAADLAIIKSAMEKVHLPDELMDDDL
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccctaatggtggaccgcgtccacagcagcctgcgcctcttcatgcaccgcaac
gccgtcttcctctgcgagcgcctctgcgcgcagttcccctccgagaccaatgtgcagttg
ttagcaacatgttacctccacaacaaccagccatatgctgcataccatattttgaaaggg
aagaagctgccagagtcccggtacctgtttgctatgtcatgctttcgtatgaacctcttg
catgaagcagaagatactctatgtccagtaaatgaaccaaacattgaggttcccaatgga
gctacaggacactacctccttggaataatttataggtgcacgggcagaatgtcagctgca
gctgaacaatttacacaagcgttgactctggatcctcttttatgggcagcatacgaggag
ttgtgtatacttggtgttgctgaagatgcagatgaatgttttagtgaagcaactgctcta
cgtctccagcaggaacacacatccacatctgctctggaaaagtcaaactttgccaatgaa
aatcgaattctaacttccagtcttccctcaagcctcggggatattatccctaagcaaatg
aaacagcttcatgctaacaacacagcagaagttcctagttaccctcatgttagagcaact
gcactgcatgtacagaacagcacaacctctaacgtagcacagtttgacaccccatcacca
acggcaacacagacttctagtattgtacctccaccactcttcaggaatgcccatgcttat
cagaatacaataagtggtgatgctcctgctaaaccgaaagctaatggatcaaaccagcca
ctcagaaggaaatacttggatcaagcaaggctaaagaaggtttctggaaggctttttaat
cagagtagtgattcaatgcctcgaagaagtgcaaggctttctcgagacatgacaataaat
tcaaattcaaattcaaatatctctcagtttggtgggaatggaacagatcactcgtcaggt
aaattgcgagtaaactcgtccacaccatcaaaattgtgttcaacagccgtacgttctgtg
caagttatgaaagggaaaccacgagctacagaaaattttgatgaaggaagcagatacgaa
gttattgatgaaatgtggacagataatgtgccagcaacctcatcttctgcaagtacgact
gagggaagattctttgagcaagataaagctgaacgaattatgtcgcaagactccaaagtt
gcaattggaatcagggagctactgggacttttgcgaacactcggggaaggttttaggctt
tcttgcttgtttaagtgccaggaagcactggaagtcttcagaaaactccctgagtcgcaa
tttaacactggttgggttctatgccaggttggtaaggcatattttgaattggttgattat
ttagaagctgatcattactttgagttagcgcatctactgtctccttgtacattggatgga
atggacatctactccactgttctttatcatctgaacgcggaaatgagactaagctaccta
gctcaagagctcatttctattgatcgactatctcctcaagcatggtgtgcagtggggaat
tgctttgccttgaggaaagatcatgagactgccttgaagaattttcaacgcgcggtacag
cttgactcaagatttgcatatgctcacactctatgcggtcatgagtattctgcactagaa
gattatgaaaatagcctcaaattctacagatgtgcacttcaggtagatgaaaggcactac
aatgcctggtatggccttggggtggtctatcttcggcaggagaagtttgagtttgctgag
catcatttcaggagggcatttcagataaaccctcgctcttctgttcttatgtgttacctt
gggatggccttgcattctctaaagaggaatgaggaggcattggagatgctggagaaagcc
atagctactgataagaagaatccactgcccaagtatcagaaggctttaatcctttcaggc
ctacaaaaatacgcagaagctttggaagagttagagcggctaaaggagattgcgcctcat
gagagtagtatgtatgcactgatgggaaagatttacaagcaactcaacattcttgacaaa
gctgttttttgctttggcattgccctggatttgaaaccccctgctgctgatcttgctata
attaagtccgcaatggagaaagtacaccttcctgatgaactgatggacgatgacctataa
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