Panicum virgatum (switchgrass): 120671174
Help
Entry
120671174 CDS
T07260
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120671174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120671174
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120671174
Complex C
U5 SnRNP specific factors
120671174
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
120671174
NCBI-ProteinID:
XP_039807386
LinkDB
All DBs
Position
4N:complement(5078422..5088117)
Genome browser
AA seq
2363 aa
AA seq
DB search
MWSGAPPPPPPHMAAAPPPPGTAGAGAGQPPPPPPPAGAPQGAKPLTPAELEAQLVEKAR
KWHQLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFV
PHAVYKLLENMPMPWEQVRHVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREK
RDRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDSEEDAAVYEWFYDHKPLMK
TKLINGPSYRKWHLSLPIMATLYRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGG
PKFEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVKLGVYHTPM
IMYIKTEDPDLPAFYYDPLINPITSTNKVDRRERKATEEDDDEDFCLPEDVEPLLKNTEL
YTDTTAAGISLLFAPKPFNMRSGRTRRAEDIPLVSEWYKEHCPPAYPVKVRVSYQKLLKC
YVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNL
NYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQ
LADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPM
WRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDV
LDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNV
AHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTT
VHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDN
PHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKR
HLFPNWVKPADSEPPPLLVYKWCQGINNLQDIWDTSDGQCVVMLQTKFEKFFEKIDLTLL
NRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLIL
GLTRASEIAGPPQMPNEFLTFADTKIETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRY
LTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENS
FVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRV
DDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCE
NKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTH
FRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSW
DRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRT
DVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNR
RFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMD
LCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWQMSKPSLVSESKDLF
DQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLH
SAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIF
SNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKR
LGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP
FQACLKIEKFGDLILKATEPQMVLYNIYDDWLKSISSYTAFSRIVLILRALHVNNEKAKM
LLKPDKTIVTEPHHIWPTLNDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIIL
GAEIAPPSQQRQQIAEIEKQSRETTQLTAVTTRTTNVHGDELIITTTSPYEQQAFASKTD
WRVRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGFLYGLS
PQDNPQVKEIRCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQD
LTSHAKILESNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDNGSNPHGYL
PTHYEKVQMLLSDRFLGFYMVPDNAPWNFNFMGVKHDPQMKYNMKLGMPRDFYHEDHRPT
HFLEFSNIEEGEVAEGDREDTFS
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcggcgcgccgcctccgccgccgccgcacatggcggcggccccgcctcccccg
ggcacggcgggggccggggcgggccagcccccgcccccgccgccgccggccggggcgccg
cagggcgccaagccgctgacgccggcggagctggaggcgcagctggtggagaaggcccgc
aagtggcaccagctcaactccaagcgctacggcgacaagcgcaagttcgggttcgtcgag
gcgcagaaggaggacatgcctcctgagcacgtccgcaaaatcatcagagaccacggagac
atgtcctccaagaagtacaggcatgacaaacgtgtttatcttggagcactcaaatttgtg
ccccatgctgtctataaactactggagaacatgccgatgccttgggagcaggttcggcat
gtgaaagtcttgtatcacattactggggctatcacttttgtaaatgaaatcccatgggtt
gtggaacccatataccttgcacagtggggtacaatgtggatcatgatgcggagagagaag
agggataggcgacattttaaacgaatgcgctttcctccatttgatgatgaggaacctcca
ctggactatgctgataatctgttggatgttgaacccctcgaggccattcaattggagttg
gacagcgaagaagatgcagctgtctatgaatggttctatgatcacaagcctcttatgaag
accaagcttataaatggccccagctacaggaaatggcatctatctcttcccataatggca
acattatatcgccttgctggccagctgttgtcagacctgattgataggaattatttctac
ttgtttgacatggagtctttctttactgccaaggcacttaatatgtgcattccagggggt
ccgaagttcgagcctctgtaccgtgatatggagaagggtgatgaggactggaatgagttt
aatgacataaataaactcatcatacgtcagccacttcggactgagtacaggattgctttc
cctcatctgtacaataacaggccaagaaaagtgaaacttggggtctatcatacccccatg
ataatgtatatcaagacagaggatccagatttgccagcattctactacgatcctctgata
aatcccatcacttcaactaacaaggttgatcgtcgggagaggaaagcaactgaagaggac
gatgatgaagatttttgtctcccagaagacgtggagcctctcttgaaaaacactgaactc
tacactgatacaacagctgctggtatatccttactttttgctccaaagccttttaacatg
agatctggcagaacacgtcgtgctgaggacattcctcttgtatcagagtggtacaaggag
cattgcccaccagcttatcctgtgaaagttcgtgtgagttaccagaagctgttgaagtgt
tatgtactcaatgagctacaccataggcctcccaaggctcagaaaaagaagcacctgttc
cgttcactccaagctacaaagtttttccaaactactgagcttgactgggcagaggcaggc
ttgcaagtttgcaagcagggttacaacatgctgaacttgttgattcacaggaagaatctt
aactatcttcatttagactacaattttaatttgaaacccgtgaagactcttaccacaaag
gaaaggaagaaatctcgttttggaaatgcattccatctgtgtcgtgagattttacgactt
actaagttggttgttgatgctaacatccagttccgtctgggaaatgttgatgctttccag
ttggcagatggtctgcaatacatattctctcatgttggccagttaactggtatgtatagg
tacaagtatcggttgatgaggcagattaggatgtgcaaagatctgaagcacttgatatat
taccgtttcaacactggccctgttggaaaaggacctggctgtgggttctgggctccaatg
tggagagtgtggctcttcttccttcggggtattgtcccattattggagcgctggttaggt
aacctgttggcaaggcagtttgagggtagacattcaaagggagtagccaaaacagtaaca
aagcaacgtgttgagtctcattttgatttagagcttcgtgccgcagttatgcacgatgtt
ctagatgctatgccagagggcatcaagcaaaacaaggcccgaactatactgcagcatctt
agtgaggcatggcgatgctggaaggcaaatatcccatggaaagtccctggtctgcctgtg
cctattgagaacatgattcttcgttatgtgaagtcaaaggcagattggtggacaaatgtt
gctcactacaaccgtgagcgtatcaggcgtggtgctacagttgacaagactgtttgtcgg
aagaatcttggaaggttaactcgtctgtggctgaaggcagaacaagagagacaacacaac
tacttgaaagatgggccatatgtaactcctgaggaagctgttgctatttatacaacaaca
gttcactggctggaatctagaaagttctcgccaattccttttccgccactatcatacaag
catgacaccaaacttcttatacttgcactggaaaggctgaaggagtcatacagtgtagca
gttaggttgaaccaactgcaacgggaggaacttgggttgattgaacaagcgtatgataat
ccacatgaagcactgtcaaggataaaaaggcatcttcttactcagcgtgctttcaaagag
gttggcatagaattcatggacttgtacagctacttgattccagtatatgaaatcgaacct
cttgaaaaaatcactgatgcataccttgaccagtacttgtggtatgagggggataaacgc
catctcttcccaaattgggtcaagcctgctgattcagaaccaccacctctgcttgtttat
aaatggtgccagggcataaataatttacaggatatttgggacacaagtgatggacagtgt
gttgtgatgctccagacaaaatttgagaagttctttgaaaaaattgatctgactctgttg
aacaggcttcttcggttggtcttagatcataacatagctgattatgttactgcaaagaac
aatgttgtgctgtcttacaaggacatgagccacacaaattcttatggtctcattagaggg
cttcagttcgcatcttttgttgttcagtattatggccttgtgctggatctcttgattctc
ggtctgacacgtgcaagtgagattgctgggccacctcaaatgccaaatgagttccttaca
tttgctgacacaaaaattgagacaaggcatcccatcaggttgtattctcgatatattgac
aaggtgcatatattgttccgcttcacccatgaggaagcacgggatttaattcagcgttac
ttgacagaacatcctgatcctaacaatgagaacatggttggttacaataacaagaaatgt
tggcctagagatgcaaggatgaggctgatgaaacatgatgtaaatcttggaagaagtgtg
ttctgggacatgaagaaccgccttccgaggagcattacaaccttagaatgggagaatagc
tttgtctctgtttacagcaaggacaatccaaacttactttttagtatgtgtgggtttgag
gtccgtatactgccaaagatacggatgactcaggaggcattcagcaacacaaaggatgga
gtatggaatttgcagaatgaacagacaaaagaaaggacagcaattgccttcctgagagtc
gatgatgagcatatgaaagtgttcgagaaccgtgtccggcagattctaatgtcatcaggg
tcaacaacattcaccaagatagtcaacaagtggaatactgctctcattggccttatgaca
tattttcgtgaagcaacagtccatacacaggagcttctggatttacttgtcaaatgtgaa
aacaagatccagacccgtatcaaaattggcctgaattcaaagatgcctagtaggtttcct
cctgttatcttctatacacctaaagaaattggaggtcttggtatgttgtcgatgggtcat
attcttataccacaaagcgatcttaggtacagtaagcagacagatgttggtgtaacacat
ttccgaagtggtatgagccatgaagaggaccagcttattcctaacttgtatcgctacatc
cagccgtgggagagtgagtttattgattcacagcgtgtttgggctgaatatgctttgaag
aggcaggaagcacagtcacagaacagacggttaactcttgaggatcttgaagactcatgg
gatagaggtatacctcgtatcaacactcttttccaaaaggaccgccatacactagcgtat
gacaaaggatggagagtgagaacagattttaagcaatatcaagtgctgaaacagaatcca
ttctggtggacacatcagcgacatgatgggaaactttggaacctaaataactacagaact
gatgtcattcaagcacttggtggtgtagaaggtattctggagcatacattatttaaagga
acttatttccctacttgggagggtctcttttgggagaaggcatcaggtttcgaagagtct
atgaaatacaagaaacttacaaatgcacagcgttctgggctcaaccaaatccccaataga
aggtttaccctgtggtggtcaccaaccatcaaccgtgcaaatgtgtatgttggtttccag
gtccagctagatcttacagggatattcatgcatgggaaaatcccgacattgaagatttct
ctgatccagatcttccgtgcacatctgtggcagaagatccatgaaagtgttgttatggat
ctttgccaagttttggatcaagagttggatgctctggagatagagactgtacagaaagag
acgatacatcccaggaagagttacaagatgaacagttcctgtgcagatgtcctccttttt
gctgcacacagatggcagatgtcaaagcctagcttagtttctgagtcgaaggatctcttt
gatcagaaagcaagtaacaagtattggattgatgtgcaactgcgttggggagattatgat
tcacatgacatagaacgttatacaagagccaagttcatggattacacaacagacaatatg
tccatctacccgtcgccaactggggtgatgattggaattgatctagcgtataatctgcac
tccgcttttggcaactggttccctgggtcaaagcccctacttcagcaagcaatgaacaag
atcatgaagtcaaatcctgctctgtatgtgctgagggagaggataaggaagggtctgcag
ttgtactcatctgaacccactgaaccgtacctttcgtcacagaactatggagagatcttc
agcaatcaaatcatatggtttgtggatgatacaaatgtgtatcgagtcaccattcacaaa
acatttgagggtaacttgaccacaaaacccatcaatggtgctattttcattttcaatcca
agaactggtcaactctttcttaaggttatccacacaagtgtatgggcggggcaaaagcgt
cttggacagctggccaagtggaaaacagctgaggaagttgctgcattagttcgatctctt
cctgtagaagagcagccaaagcaaattattgtgacaaggaagggtatgttggatcctttg
gaggtccatctacttgacttccctaacattgttatcaagggcagcgaactgcagcttcct
ttccaggcttgcttaaagattgagaagtttggtgaccttattctgaaggcaactgaacca
cagatggtcctttataatatatatgatgattggttgaaaagtatctcttcatacacagca
ttctctcgtatcgtacttattctacgggctctacatgtgaataacgagaaggcaaagatg
ttgctcaaacctgataaaacaattgttaccgaaccacatcacatatggccaactttaaat
gatgaacagtggttgaaggttgaatgcgcactaagggacctcattctttctgattatgcc
aagaaaaacaatgttaatacttctgcattgacacaatctgaaatccgagatatcatactt
ggtgcggaaattgctccaccatcacagcagaggcaacagattgccgagattgagaaacag
tctcgagagacgactcagttaaccgctgttaccacaaggacgacgaatgtacatggagat
gagctcattatcacgacaacaagtccatatgagcaacaagcatttgcatcaaagactgat
tggcgtgtcagagcaatctctgccacaaacttgtatcttcgtgtcaatcacatttatgtc
aactctgatgatataaaggagactggctacacttacattatgccaaagaacatattgaag
aagttcatatgcatagcagatctgcggacacagattgcaggattcttgtatgggctgagt
ccacaggacaatcctcaagttaaagagatcaggtgtatagccattcctccacagcatgga
actcaccagatggtgactctgccagcaaatcttcctgagcatgagttccttaatgacctg
gaaccattgggatggatgcatacacagccgaatgaagctccacagctatcaccacaggat
ctgacatcacatgcaaagattctggagagcaacaaacaatgggatggtgagaagtgtatc
atcctgacatgcagcttcactccaggatcctgctcgttgactgcatacaagctgacacca
agcggttacgagtggggacgcagcaacaaggacaatgggagcaaccctcatggatacctc
ccaactcattacgagaaggtccagatgcttctgagtgaccgcttccttggcttctacatg
gttccagataacgccccttggaacttcaacttcatgggtgtgaagcatgaccctcagatg
aagtacaatatgaagctgggcatgccccgggacttctaccacgaggaccaccggccaaca
cacttcttggagttcagcaacatcgaggagggtgaggtcgcggaaggggatagggaggat
accttctcatag
DBGET
integrated database retrieval system
