Panicum virgatum (switchgrass): 120671198
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Entry
120671198 CDS
T07260
Name
(RefSeq) tryptophan synthase beta chain 2-like isoform X1
KO
K06001
tryptophan synthase beta chain [EC:
4.2.1.20
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00260
Glycine, serine and threonine metabolism
pvir00400
Phenylalanine, tyrosine and tryptophan biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01230
Biosynthesis of amino acids
Module
pvir_M00023
Tryptophan biosynthesis, chorismate => tryptophan
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
120671198
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
120671198
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.20 tryptophan synthase
120671198
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Gene cluster
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Motif
Pfam:
PALP
Motif
Other DBs
NCBI-GeneID:
120671198
NCBI-ProteinID:
XP_039807417
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Position
4N:complement(42012997..42016439)
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AA seq
497 aa
AA seq
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MAAASAAATLRPALPQAGPEQRASSLLCTPKHRVAASGRRSLSFAARASLNSGGKVSIPK
QWYNLVADLPVKPPPPLHPQTHQPLHPSDLSPLFPDELIRQELTDERFVDIPQEVIDVYE
LWRPTPLIRARRLEKLLGTPAKIYYKYEGTSPAGSHKPNTAVPQAWYNAAAGVKNVVTET
GAGQWGSALSFASSLFGLSCEVWQVRASFEQKPYRRLMMETWGAKVHPSPSEVTEAGRAI
LAADPASPGSLGMAISEAVEVAATDADTKYCLGSVLNHVLLHQTVIGEECLEQLAALGEA
PPDVVIGCTGGGSNFGGLAFPFMREKLAGRMSPEFRAVEPAACPTLTKGVYAYDFGDTAG
LTPLMKMHTLGHGFVPDPIHAGGLRYHGMAPLISHVYELGFMDAVAIQQTECFQAALQFA
RTEGIIPAPEPAHAIAAAIREALECKKTGEEKVILMAMCGHGHFDLASYEKYMRGDMVDL
SHPADKLEASLAAVPKI
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcctccgccgccgccacccttcgccctgccctgccccaagcagggccggag
caaagagcttcttcactgctctgcacgcccaagcacagggtcgctgccagcgggaggaga
agcctgagcttcgccgcgagggccagtctgaactcgggtggcaaggtgagcatccccaag
caatggtacaacctcgtcgccgacctgccggtgaagccgccgccgccgctgcacccgcag
acgcaccagcctctgcatcccagcgacctgtcgcccctgttccccgacgagctgatccgg
caggagcttaccgacgagcggttcgtcgacataccccaggaggtcatcgacgtgtacgag
ctctggcgcccgacgccgctcatcagggccaggaggctggagaagctgctcggcacgccg
gcgaagatctactacaagtacgaggggaccagcccggcggggtcgcacaagcccaacacc
gccgtgccgcaggcgtggtacaacgccgccgcgggggtcaagaacgtggtcaccgagacc
ggcgccggccagtggggcagcgcgctctccttcgccagcagcctcttcggcctcagctgc
gaggtgtggcaggtgcgcgcgtcgttcgaacagaagccgtaccggcggctgatgatggag
acgtggggcgccaaggtgcacccgtcgccgtcggaggtgacggaggccggcagggcgatc
ctggcggcggacccggccagcccgggcagcctcgggatggccatctcggaggcggtggag
gtggcggccaccgacgccgacaccaagtactgcctgggcagcgtgctgaaccacgtcctg
ctccaccagaccgtcatcggcgaggagtgcctggagcagctggcggcgctcggcgaggcg
ccgcccgacgtcgtcatcggctgcaccggcggcgggtccaacttcggcgggctcgcgttc
ccgttcatgcgcgagaagctcgccggcaggatgagcccggagttcagggccgtggagccc
gcggcgtgccccacgctcaccaagggcgtctacgcctacgacttcggcgacacggccggg
ctcacgccgctgatgaagatgcacacgctcggccacggcttcgtccccgacccgatccac
gcaggtgggcttcgctaccatggaatggcgcctctgatctcgcatgtgtacgagctcggc
ttcatggatgccgtcgccatacagcagaccgaatgcttccaagcggcgttgcaattcgcc
cggacggagggcatcatcccggcgccggagccggcgcacgcgatcgcggcggcgatccgg
gaggcgctggagtgcaagaagaccggggaggagaaggtcatcctgatggccatgtgcggc
cacggccacttcgacctcgcctcgtacgagaagtacatgaggggcgacatggtcgacctg
tcgcacccggcggataagctggaggcctcactcgccgccgtgcccaaaatctga
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