Panicum virgatum (switchgrass): 120671254
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Entry
120671254 CDS
T07260
Name
(RefSeq) probable E3 ubiquitin ligase SUD1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120671254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120671254
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120671254
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
120671254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
zf-RING_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
120671254
NCBI-ProteinID:
XP_039807477
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All DBs
Position
4N:complement(42511525..42517876)
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AA seq
1085 aa
AA seq
DB search
MAEIAERAAAGELPEEPRPPPGEEEEEEEEEEEGDVCRICRNRGDEDHPLRYPCACSGSI
KFVHQDCLLQWLDHSNSRQCEVCKHAFSFSPVYADNAPTRLPFQELIVGVGLKACHVFQF
ILRLAFVLSVWLMIIPFITYWIWRLTFVRSLGEAQRLFLSHISALLILSDCLHGFLLSAI
IVLIFLGATSLRDYIRHLRELGGHDAERDDGGRERHGARAVRRLAGPNNRVPADGNIDEL
AEAQGIGAGELLRRNAENVAARLERLEAQVEQMLDGLDDADGAEDVPFDELVGMQGPVFH
LVENAITVLASNAIFLIVVIFVPFSLGRIVLYYLSCFFSSASTPMLAKMMPFTETAISIA
NDTMKSALNVVKNFSSDSNNEGVIGHVIEVVTQSLKINATGLSVIQGTGKSSLIKGTTIG
SSYLSDLTTLAVGYMFIFCLVFLYIGSLALLRYARGERFTIGRLYGIATILEAIPSLCRQ
FFAGMKHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTLKMLGTTIAQRVEFFTMSPLASS
SIHWLVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVL
LSVAVYGSLIVMLVFLPVKLAMQVAPSIFPLDITIFDPFTEIPVDVLLFQICIPFAIEHF
RPRATIKSLLHHWFAAVGWALGLTDFLLPKPEENGGQENWNGRAERRDRGHGGREMIAPQ
VEQRMIQHVAAEDNGRGNANEANDVAEEPDVDDQGDSEYGFVLRIVLLLVLAWMTLLIFN
AGMVVIPISLGRLVFEAVPRLPITHGIKCNDLFSFSIGCYILWSVAAGTRYAIDYIRSRQ
LGILVQQICKWCSIVLKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPIDESPVFLLYQD
WALGLIFLKIWTRLVMLDQMAPLVDESWRSKFERVRDDGFSRLRGLWVLHEIIMPIVTKL
LTALCVPYVLARGIFPVLGYPLIVNSAVYRFAWLGCLIFSTLFFCGKRFHVWFTNLHNSI
RDDRYLIGRRLHNFGEDTPEPSESGATIGSDDQDRALVLQDQEEEVGLRLRRNNVRANQQ
PRLAF
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcggagatcgccgagcgggcggccgcgggcgagctgccggaggagccgaggccgccg
cccggggaggaggaggaggaggaggaggaggaggaggagggggacgtgtgccggatctgc
cgcaaccgcggcgacgaggaccacccgctccggtacccgtgcgcctgcagcggcagcatc
aagttcgtgcaccaggactgcctcctccagtggctcgaccatagcaactcgcgccagtgc
gaggtttgtaaacatgcattctccttctcacctgtgtacgctgacaatgctccgacaaga
cttcctttccaagaactgatagttggtgttggattgaaagcatgccatgtgtttcaattc
attctccggcttgcttttgttctctcagtttggctcatgattatcccattcattacctac
tggatatggaggttaacatttgtgagaagtcttggtgaagcgcaaaggctgttcctgagt
cacatcagtgctctgttgatccttagtgattgccttcatggattccttctctcagccatc
attgtccttatatttcttggagccacctcattacgggactacataaggcatttgcgtgag
cttggtggacatgatgctgagagggatgatggaggccgtgaaaggcatggtgctcgggct
gtaaggaggttagcgggtcctaacaatagggttcctgcagatggaaatattgatgaatta
gcagaagcccaaggaattggtgctggcgaacttctgaggagaaatgctgaaaatgttgct
gctcgattggaacgacttgaggctcaggttgagcagatgcttgatggtctggatgatgca
gatggtgcagaggatgttccttttgacgaacttgttggtatgcaaggccctgtcttccac
ttggttgagaacgcaataacagttttggccagcaatgctatattcctcattgttgtgatc
tttgttccattctcattgggaaggattgtcctgtactatctatcatgttttttctcttcg
gcctctactcctatgctagcaaaaatgatgcccttcacagaaacagctatttctatagct
aatgatacaatgaagagtgcacttaatgttgtgaagaatttttcttccgatagtaacaat
gaaggtgttattgggcatgtgattgaggttgttactcaatccttgaagataaatgccact
ggtcttagtgtaattcaaggcactgggaagagcagtttgataaaaggaacaaccatcggc
tcatcttatctttccgatctgacaactcttgctgttggatacatgttcatcttctgcctt
gtatttttgtacatcggatcactggctttacttcgatatgctaggggagaacgttttacc
attggtagactctatggtatagctactatattggaggccattccatctctttgcaggcag
ttctttgctggaatgaagcatctcatgactatggtcaaagtcgcattccttctggtgatt
gagcttggtgtctttcctcttatgtgtggttggtggcttgatgtttgtactctgaagatg
ctgggcacaacaatagctcagagagttgaattctttacgatgtcacccttggcgagctct
tctatccattggctagttgggattgtgtatatgctccaaataagcatatttgtcagtctt
cttcgaggggtactgcgcaatggagttctttattttctgagggaccctgctgatccaaat
tacaatccgtttagggacttgattgatgatcctgtgcataaacatgctcgacgggttctt
ttgtctgttgcggtgtatggaagcttgattgtgatgttggtcttcttacctgtaaaactg
gccatgcaagtagcaccttcaatttttcctctggacatcacgatatttgacccattcact
gagattccagttgatgtcctcctgttccaaatatgcatccccttcgcgattgagcacttc
aggcctcgtgcaactattaaatctcttttgcaccattggtttgctgcggttggttgggcc
cttggattaactgatttcttactgccaaaacctgaagaaaatggtgggcaagaaaattgg
aatggcagggcagaaagaagagataggggccatggtgggcgagaaatgattgctccacag
gttgaacaacgcatgatacaacatgttgctgcagaagataatggcaggggaaatgcaaat
gaagccaatgatgtcgctgaagaacctgatgtagatgatcagggagactctgagtacggc
tttgtgcttcggattgtgctcttgcttgtactggcatggatgacactactaatattcaat
gctggaatggtagttattcctatctcgcttggccgtctcgtttttgaagctgttccccgc
ctgccaatcacacatggcatcaagtgcaatgatctgttctcctttagcattgggtgctat
attctctggagcgtagcagctggaaccagatatgcaattgattatatcagatcgcggcaa
ctaggaatcctggtacaacagatctgcaagtggtgctctattgttttgaagagctctgtt
ctcttgtcaatatggatctttgttattcctgtgttgattggactcctttttgagctactg
gtcattgtaccaatgagggtgcctatcgatgagagccctgtcttcctactataccaggat
tgggcccttgggttaatattcttgaaaatatggactaggctggttatgttggatcaaatg
gcacctttggttgatgaaagttggaggtcaaagtttgagagagttagagacgatggcttc
tcccgtttaaggggtctgtgggtcctccatgaaattataatgccgattgtcaccaagctc
cttactgctctctgtgtcccatacgtccttgcaaggggcatcttcccggtgctgggctac
cctctcatcgtgaactcagcagtgtaccgctttgcctggctaggctgcctgatcttcagc
accctcttcttctgtggcaagagattccatgtctggttcaccaacctccacaactccatc
agggatgaccgctatctgattggccggaggctgcacaactttggtgaggacacacctgaa
ccaagcgaatccggagcaactattgggtcagatgaccaggacagggcactagtcctacaa
gatcaagaagaggaagtgggactgaggctgaggcgcaataatgtgcgcgcaaaccaacag
cccaggctagcattttaa
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