Panicum virgatum (switchgrass): 120671422
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Entry
120671422 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 19-like
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120671422
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120671422
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120671422
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120671422
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120671422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
zf-MYND
Motif
Other DBs
NCBI-GeneID:
120671422
NCBI-ProteinID:
XP_039807668
LinkDB
All DBs
Position
4N:complement(44039842..44046863)
Genome browser
AA seq
1002 aa
AA seq
DB search
MLGGGGGGGGGGAGLGLDFSAVIQVAVVGFVLFSAAVVAVRRAASRYFVVDAAGFAASYD
DHHHHHHHSPPAYPMSPKRSQQERGAAGGEVSGPCAACGVVTSKKCSRCKSVRYCSQKCQ
TKHWQDDHKSKCKPMNADKFSFGLEANSKKSSGFGRISLVPTRKKLKKGQVLFSYDEFLN
LYDRKDFDFIPCGLMNCGNSCFANVVLQCLSCTRPLVAYLLGKDHSRECSTRHEDWCFLC
ELQCHVQRASESIHPFSPANILSHLPNIGGNLGYGRQEDAHEFMRFAIDKMQSACLDEYG
GEKAVDLSTQETTIIQHIFGGRLQSQVQCTACGMVSNRYDNMMDLTVEIQGDAESLEKCL
DQFTAVEWLDGDNKYKCDGCNDYVKARKHLSVHQAPNILTITLKRFQSGRFGKLNKRVTF
PMNLDLTPYMSSTDGSDLYDLYAVVVHLDMMNASFFGHYICYIKGSRGNWYKIDDCKVMI
VDDEEVHAQGAYMLLYSRRTARPRPLATVEEPVKQPQQCKVLPLNGQNHMIPEPEDATLI
CELPLESSEDLLQQDSESNNESLHKIDIKDQGSDLHTSIEADKLISDEVDARAPCSALEA
STSLRSVPLCPPVEGGPATMSSVEFGNSMSEASSDHSFAEEREEPSSCIDSVDYMDVDTE
AGIEVERCDERPPALDGSIGKTDNKTSVPILVNELAGKPRSTFSPGFLDKPSRKRSSFAE
EDHIGGNNAGISRKLNGHCNEYISSSEQVLANSCGNSPSSGSENCNGDMFATSRNVNYYT
VNGVTQSSNHSLHADKLDVPVVSHGFEPRPYSESSSGSSKNCSSTSNRKPLKACQGDMSF
LSRGFLGRPSSRGNSVNVADRLPFGNGTSSSLVNGNSKPSNDSRESAVLGTSSDIPIEQK
SNGATVVLEHVEERCSDCTINGSSFQLRAASNHLDENSHAILASNNSSCRQENGSNGLNG
VGCQRDDTPSMLVSKNSTGSEHDGLRRRVTSKFFEQNGIDAQ
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgctggggggcggcggcggcggaggaggcggcggcgcgggcctgggactcgacttctcg
gcggtgattcaggtggcggtcgtcgggttcgtgctcttctccgcggccgttgtcgccgtg
cgccgcgccgcctcgcgctacttcgtcgtcgacgccgcggggttcgccgcctcctacgac
gatcaccaccaccaccaccaccacagcccgcccgcctacccgatgtcgcccaagaggagc
cagcaggagcggggggccgccggcggggaggtgtccgggccctgcgccgcgtgcggcgtc
gtcacctccaagaagtgctcccggtgcaagagcgtgcggtactgttctcaaaaatgtcag
acaaaacattggcaagatgatcacaaatccaagtgcaaaccgatgaatgctgacaagttc
tcctttggacttgaggccaacagcaagaaatcatctggtttcggtcgcatctcattggtc
cccacccgtaaaaaactaaaaaagggtcaggttctcttttcttatgatgaatttctaaat
ctgtacgaccgcaaggactttgattttataccttgtgggcttatgaattgtggcaacagt
tgctttgctaacgtggttttacaatgtctctcatgcacgagaccacttgtggcctatctt
ttaggaaaggaccatagcagggaatgttctacgagacatgaagattggtgtttcttgtgt
gagctgcaatgccatgttcaaagagctagtgaaagtatacacccattttctcctgcgaat
attctttctcatctgccaaatattggtggcaatctgggctatggtaggcaagaggatgct
catgaattcatgaggtttgcaatcgataagatgcaatctgcttgccttgatgaatatgga
ggtgagaaggctgtagatcttagcacgcaagagaccaccataattcagcacatatttggt
gggcgtctgcagtcacaggttcagtgtactgcatgtggaatggtctcaaaccgttatgat
aatatgatggacttgacagttgaaattcaaggtgatgctgaatcattggaaaaatgcttg
gatcagtttactgctgtcgagtggcttgatggggataataagtataagtgtgatggatgt
aatgactatgtcaaagcacggaagcatctttcagttcatcaagctccaaatatactcact
atcactctcaaaaggtttcagagtggtagatttgggaaactgaacaagagagttacattc
cctatgaacttagatctgacaccatacatgagtagcactgacggaagtgacctgtatgat
ctctatgctgtcgttgttcatctggatatgatgaatgcatcattttttggccattacata
tgctacatcaaaggttctcgaggaaattggtataaaatcgatgactgcaaggttatgatt
gttgatgatgaggaggtacatgctcaaggtgcttatatgcttttatatagcaggagaaca
gctcggcccaggccacttgctacagttgaggagcccgttaaacagccgcaacagtgcaaa
gtgctgcctttaaatggacaaaaccatatgataccagaaccggaggatgcaaccttaatt
tgtgaattacctttggagtcttcagaagatctgttacaacaggattctgaatccaataat
gaatctttgcataaaattgatatcaaggaccaggggtccgacttacatacaagcattgag
gctgacaaactcattagtgatgaagtagatgctagagctccatgttctgcattggaagcc
tctacttccttgagatctgtgccactttgccctccggtagaaggtggtcctgctaccatg
agctctgtggaatttggcaattccatgagtgaagcgtcttcagatcattcctttgcagag
gaacgtgaggagccttcctcatgtattgattcagttgactatatggatgttgatactgaa
gctggcatagaagttgagagatgtgatgagcgaccacctgccttggatggttcgatcgga
aagacggataataaaacatcagtcccaatcttagtgaatgagttggcaggaaaaccaaga
tcaacattttctcctggtttcctcgataagccctcaagaaagaggtcttcctttgcagaa
gaggatcacattggtggcaataatgctggtatctctcgaaagttaaatggccattgcaat
gaatatatcagcagctcagaacaagttcttgccaattcctgtggcaacagcccatcgtca
ggaagtgaaaactgcaatggagatatgttcgcaacatccaggaatgtcaattactatacg
gtcaatggtgttacgcaatctagcaatcactctttgcatgcagacaagctagatgtgcct
gtagtttctcatggttttgagccaagaccttacagtgaatcatcatcaggcagcagcaaa
aactgcagtagtacaagcaataggaaaccattgaaagcttgccaaggggacatgtcattc
ttatcccggggcttcctaggaaggccttcttctagaggcaattcagtcaatgtagctgat
cgcttgccgtttggtaatggcacatcatcatcccttgtgaatggcaacagtaagccaagt
aatgactccagggaatcagcagtcctaggcacaagctctgacattcctatagagcaaaaa
tctaatggtgccacagtagtgcttgagcatgtggaagaaaggtgttcagattgcacaata
aatggctcttcattccaactaagagcagcttccaaccacctcgatgaaaatagccatgca
attttggccagcaataattccagttgtcggcaagaaaatggcagtaatggcctgaatggt
gtaggttgccaaagggatgacacaccttccatgttagtctccaagaatagcacaggatct
gaacatgatggattgcgacgacgagtaacctcgaaattttttgagcagaatggtattgat
gcccaataa
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integrated database retrieval system
