Panicum virgatum (switchgrass): 120671939
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Entry
120671939 CDS
T07260
Name
(RefSeq) putative ABC transporter B family member 8
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120671939
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120671939
04147 Exosome [BR:
pvir04147
]
120671939
04090 CD molecules [BR:
pvir04090
]
120671939
Enzymes [BR:
pvir01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
120671939
Transporters [BR:
pvir02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
120671939
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120671939
CD molecules [BR:
pvir04090
]
Proteins
120671939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
AAA_16
AAA_29
Zeta_toxin
AAA
ABC_ATPase
RsgA_GTPase
AAA_30
AAA_15
HUTI_composite_bact
Motif
Other DBs
NCBI-GeneID:
120671939
NCBI-ProteinID:
XP_039808141
LinkDB
All DBs
Position
5N:complement(54899099..54906122)
Genome browser
AA seq
1239 aa
AA seq
DB search
MKTSAPSGTGGGVGGGGGQRPMSIRGMFRFADRVDVVLMALGTLGAIGDGCSTNLLLIFA
SDVMNALGYGRGGGGAAAAATVDFMHEVEKSCLNFIYLAFAVLAVAFMEGYCWSRTSERQ
VLRIRHLYLQAILRQEVGFFDSQEATTSEIINSISKDASLIQEVLSEKVPLFLMHSTVFV
SGLAFATYFCWRLALVSFPLVLLLIIPGLIYGKYLLYLSCQSRHEYAKANSLVEQALGSI
KTVYSFTAEKRIIQKYTAILDKTIELGIKQGIAKGLAVGFTGLSFAIWAFLAWYGSRLVT
HHQASGGRIYAAGISFVLGGLSLGMALPELKHFTEASVAATRILDRINRVPEINAEDPKG
LVLDQIRGELQFESVRFVYPSRPNMTVLRDFNLQIPAGQTIALVGSSGSGKSTAIALVQR
FYDASEGTVKIDGFNIKELQLKWIRSKMGLVSQDHALFGTSIKENILFGKPDATMDEVYA
AAMTANAHNFIRGLPEEYETKIGERGALLSGGQKQRIAIARAIIKNPAILLLDEATSALD
SESEKLVQHALDQASMGRTTLVVAHKLSTVKNADQIAVVDGGTIAEIGTHDELISKGGPY
SRLVKLQKMVSYIDQENDQFRASSVARTSTSRHSVSRASPMPLTPAVLKEISSDVSPPAP
SFSRLLAMNAPEWRQAVIGSLSALVYGSLQPIYAITIGGMIAAFFVQDHNEMNAIIRRYA
LIFCSLSMVSIVVNLLQHYNFAYMGEHLVRRIRVQVLEKILTFEAAWFDEETNSSGSLCS
RLSNEASLVKTLVADRMSLLLQTASGIIIAVTMGLIVAWKLALVMIAVQPSTMICYYAKK
IVLSNVSRDLAKAQHQSTQIAIEAVYNHRMVTSFGCSSKVLQLFEHAQEEPLKRARKKSW
VAGLTTGLSPCLSFLTWALDFWYGGKLAQSGEISAGDVFKTFFVLVSTGKLIADAGSMTS
DLAKGANAVASVFEVLDRKSISPQNSQVEKEDQKKKIQGRIEFKKVDFSYPTRPECLILQ
DFSLDVKAGTSVGLVGRSGCGKSTIIGLIQRFYDVDRGSVRIDGMDVREMNILWFRGFTA
LVSQEPAMFSGSVRDNIAFGKPEADEEEIVEAAKAANAHEFISSLKDGYDTDCGEHGIQL
SGGQKQRIAIARAIIRNPAILLLDEATSALDAQSEQVVQEALDRIMSGRTTIVVAHRLNT
IKNVDSIAFLGEGKVVERGSYPQLMNKKGAFYNLATLQK
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgagtgccccgtcgggcaccggcggcggcgtcggcggcggtggcgggcagcgg
ccgatgagcatccgcggcatgttccggtttgcggaccgggtggacgtcgtgcttatggcc
ctgggcacgctgggggccatcggcgacggctgctccaccaacctgctgctcatcttcgcc
agcgacgtgatgaacgcgctcgggtacggtcgcggcggcggcggcgccgccgccgccgcg
accgtggatttcatgcacgaggtggagaagtcgtgcctgaatttcatctacctggcgttc
gccgtcttggcggtggcgttcatggaagggtactgctggagccggacgagcgagcggcag
gtgctgcggatccggcacctgtacctgcaggccatcctgcggcaggaggtgggcttcttc
gactcgcaggaggccaccacctcggagatcattaacagcatctccaaggacgcgtcgctc
atccaggaggtcctcagcgagaaggtcccgctatttctgatgcactctactgtgttcgtc
tccggactggccttcgccacctatttctgctggaggctggccctggtctcttttcctctg
gtcctgcttctcataatcccggggctgatctacggcaagtaccttctctacctctcctgc
cagtcgcgccacgagtacgccaaggcgaactccctggtcgagcaagcgctggggtcgatc
aagaccgtctactcattcacagccgagaagaggatcatccagaagtacacggccatcctt
gacaagacgatcgagctggggataaagcagggcatcgccaagggtctcgccgttggattc
accggcctttctttcgccatctgggccttcctcgcatggtacggcagcaggttggtgacg
caccatcaggcaagtggtgggaggatatatgctgctgggatttccttcgtcttgggtggc
ctatcacttggaatggcactccctgagctgaaacatttcactgaggcatctgttgctgcc
accagaattctcgaccggataaaccgtgtgcccgagatcaacgctgaggacccgaagggc
cttgtcttggaccaaatccggggagagcttcagtttgaatctgtccgttttgtgtacccg
tcaaggccaaacatgacagtcctcagagacttcaacctccagattcctgctgggcaaacc
attgctctggtcgggtctagtggcagcggcaagtcaaccgcaatagcgctagtgcagcgc
ttttatgatgccagtgaaggaactgtcaagattgacggtttcaacattaaggaactccaa
ctcaagtggatcaggagcaaaatggggcttgtcagccaagatcatgcattgtttggtaca
tcaataaaagagaacatcctgtttggcaaaccggatgcgaccatggatgaagtttatgca
gcagccatgacagcaaatgctcacaacttcataagggggcttcctgaggaatacgagact
aagatcggcgagcgtggagcattgttatcaggtggccagaagcagcgtattgccattgca
agggcaattatcaagaaccctgctatacttttgcttgacgaagccacgagtgcacttgat
tcagaatcagagaagttggtgcagcatgcgcttgatcaagcatctatgggacggacaact
ctggtagtagctcataagctttcaaccgtgaagaatgctgatcaaattgctgtagttgat
gggggtacaatagctgaaattggtacacatgatgaactgatcagcaaggggggcccatac
tcaagacttgtgaaattacagaagatggtgagttacatcgatcaagaaaatgatcagttt
agggcttcgtcagtggccaggaccagcaccagccgtcacagtgtgtccagagcaagtcca
atgccacttacaccagctgtcttaaaggaaatcagttctgatgtttcgccacctgcacca
tctttctccaggcttcttgcaatgaatgcaccagaatggaggcaagcagttataggcagc
ctgtctgcattggtatatggttccttgcagcccatctatgccataaccattggaggaatg
attgctgcattctttgttcaggaccacaatgagatgaatgcaatcatcagacggtatgcc
ttgatcttctgctcattgtctatggtatccattgttgtaaatctattgcaacactacaac
tttgcatacatgggggagcatcttgttaggcgcatccgagtccaagtacttgaaaagatc
ttaacctttgaggcagcatggtttgatgaagaaacaaattcaagtggttctttgtgctct
cggctaagcaatgaagcttctcttgtcaaaacccttgttgcagacagaatgtccttactg
cttcaaacagcttctggaattataattgcggtgacaatgggcctgatagtagcttggaag
cttgctcttgtcatgatagctgtacaaccatctacaatgatatgctactatgccaaaaag
atagtactctcaaatgtttcaagggacttggccaaggctcagcatcaaagtactcagatt
gccatagaagctgtttacaaccacaggatggtaacctcctttgggtgttcatcaaaggtt
cttcagctctttgagcatgcacaagaggaaccactgaagagagcaaggaagaagtcatgg
gtagcagggctcaccacaggattgtcaccttgcctctcattcttaacatgggcattggac
ttctggtacggtgggaagctggcacagtctggagagatctctgcgggtgatgttttcaaa
acctttttcgtcctggtgagcacaggaaagctgattgctgatgctggtagcatgacatca
gacctggcaaagggagcaaatgcagttgcttcagtatttgaagtgctagacaggaaatct
atctctccacaaaattcacaggtggaaaaggaagaccagaagaagaaaatacaaggaaga
atagagttcaaaaaggtagacttttcatatccaacaagaccagaatgcctcatcctacaa
gattttagcttggatgtgaaagcaggaacaagtgttggcctggttgggagaagtggttgt
ggtaaatctactattataggtttgatccaaaggttctacgatgttgatagaggatctgta
aggattgatggcatggatgtgcgggagatgaatattctttggtttcgaggatttacagct
cttgttagtcaggagccagcaatgttttcaggtagtgtcagggataacattgctttcggt
aaaccagaagcagatgaagaggagattgtggaggccgcaaaagctgcaaatgcacatgag
ttcatatcatcattgaaggatggatatgatactgattgtggagagcatggtatacaactc
tcaggaggacagaagcaaagaattgcaattgcaagggcaataatcagaaatccagcaata
ctactgcttgatgaagcaacaagcgcacttgatgcacagtcagagcaagtggtgcaggaa
gctctggatcgaataatgtcagggaggaccacaatcgtggtggcacatcgactaaacaca
atcaagaatgtagactcaattgctttcctgggagagggtaaggtggtggagcgtggctct
tacccgcagctcatgaacaagaaaggggcattctacaacctcgcaactcttcagaagtaa
DBGET
integrated database retrieval system
