KEGG   Panicum virgatum (switchgrass): 120671962
Entry
120671962         CDS       T07260                                 
Name
(RefSeq) histone deacetylase 5-like
  KO
K11406  histone deacetylase 4/5 [EC:3.5.1.98]
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120671962
Enzymes [BR:pvir01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     120671962
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     120671962
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 120671962
NCBI-ProteinID: XP_039808174
LinkDB
Position
5N:complement(56054910..56059355)
AA seq 502 aa
MWMDKSPNVNMFLPTKDSLTAATVELKAVNEKALALHSLPRSPVKKTKELKSDSINEKTY
ALRNRQRNLNSKRDEKCEVLAEKVSGIRHSQRVLVMKQEQKSHPTALQVPAPHPQEYFME
ENAGKVCLIYDKRMLKHIPPRKHVEKPERIAAIYRKLQAENLLERCVVYESECARLKYVL
HVHKDKYFRSILSERETKDDKGDMYFGENSLDAILLAAGGAIKACKKVITGEHANAFAIV
RPPGHHAKKAMGGGFCYFNNIAVGAKYLMEKHGTKKVLILDWDVHFCDGTEDIFRESADV
LVISMHRLGLFPDLDGNHFRRFAYSGNIGKGAGTGYNCNLCWSDSKVGNDDLYAVFDYIV
MPLIQDFEPEIILISAGFDAAKGDLLGDCWVTHVGYATVLHKLLKLKIGLVLILEGGYNL
EVLGECCASCVRVLSGDYTVVDDREEYFPLASTWDAILQLRASLSCYWESLKPDIPEDVL
AWKQPNPNHAKIPNPDHAKIPD
NT seq 1509 nt   +upstreamnt  +downstreamnt
atgtggatggataaatcaccaaacgttaatatgttcctcccaaccaaggactccttgacg
gcggcaactgttgagttgaaagctgtaaatgaaaaggctctcgcccttcatagtctgcca
cgttcacctgtgaagaaaacaaaggagctgaaaagcgactccatcaatgaaaagacttat
gcccttcgtaatcgtcagaggaatttgaattctaaaagagatgagaagtgtgaagttctt
gcggaaaaggtttctggtattcgccactcacaacgtgttctagttatgaaacaagagcag
aagagtcaccctactgctttacaggtccctgcccctcatccacaagaatatttcatggaa
gagaatgctggtaaagtttgtctgatctacgacaaacggatgctgaaacatattcccccc
cgtaagcatgttgagaagcctgagaggattgcagcaatatatagaaagcttcaagccgaa
aatttgcttgaaaggtgtgttgtctatgagtcagagtgtgccaggctgaagtacgtgctg
catgtccacaaggacaagtacttccgttccatcttaagcgaaagagagactaaggatgat
aaaggcgacatgtattttggagaaaattccctggacgctattttgttggcagctggtgga
gctatcaaggcctgtaagaaagttattactggcgaacatgcaaatgcattcgctattgtt
cgtccgcccggacaccacgcaaagaaagcaatgggcggaggattttgttacttcaacaat
attgctgttggtgccaagtacctaatggaaaaacacggaaccaagaaagttcttatattg
gattgggatgtccatttctgtgatggtacagaagatatcttcagagagagtgctgatgtt
ctagttatttcaatgcaccgtcttggtttgtttccagatctggatggtaatcattttagg
cgttttgcatattctggaaacattggtaaaggtgctggtactggctataactgtaatttg
tgttggagtgactctaaagttggtaatgatgacctctatgcggtgtttgattatattgtt
atgccattaattcaagacttcgagcctgaaatcattttgatatctgcaggcttcgatgct
gctaaaggagatttgcttggtgactgttgggtcacccatgttggatatgctactgttctg
cataagctgttgaagcttaaaattgggcttgttctcatcctagaaggtggatataacttg
gaggttttaggtgaatgctgtgcgtcatgtgtgcgagttttatcaggtgattacactgtt
gtagatgacagagaggagtactttccattggcatctacttgggatgctatactacagctt
agggcttccttgagttgctattgggagtctttaaaacctgacatcccagaagatgttctt
gcttggaagcagccaaatccaaatcatgcaaagatcccaaatcctgatcatgcaaagata
ccagactga

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